Publications
Selected publications
- Phytochromes function as thermosensors in Arabidopsis (Journal article - 2016)
- Using constraints and their value for optimization of large ODE systems. (Journal article - 2015)
- Coordinated circadian timing through the integration of local inputs in Arabidopsis thaliana (Journal article - 2019)
2022
Editorial: Multi-Disciplinary Approaches to Plant Responses to Climate Change
Charoensawan, V., Cortijo, S., Domijan, M., & Negrao, S. (2022). Editorial: Multi-Disciplinary Approaches to Plant Responses to Climate Change. FRONTIERS IN PLANT SCIENCE, 13. doi:10.3389/fpls.2022.876432
2021
NRF2/KEAP1 pathway is required to fine-tune circadian oscillations as part of the negative feedback loop of the molecular clock: implications for tissue homeostasis and therapeutic interventions
Sutton, E., Early, J., Hughes, A., Gall, L., Carter, A., Copple, I., . . . Pekovic-Vaughan, V. (2021). NRF2/KEAP1 pathway is required to fine-tune circadian oscillations as part of the negative feedback loop of the molecular clock: implications for tissue homeostasis and therapeutic interventions. In FREE RADICAL BIOLOGY AND MEDICINE Vol. 177. doi:10.1016/j.freeradbiomed.2021.08.042
Fine tuning of hormonal signaling is linked to dormancy status in sweet cherry flower buds
Vimont, N., Schwarzenberg, A., Domijan, M., Donkpegan, A. S. L., Beauvieux, R., le Dantec, L., . . . Wenden, B. (2021). Fine tuning of hormonal signaling is linked to dormancy status in sweet cherry flower buds. TREE PHYSIOLOGY, 41(4), 544-561. doi:10.1093/treephys/tpaa122
2019
Coordinated circadian timing through the integration of local inputs in Arabidopsis thaliana
Greenwood, M., Domijan, M., Gould, P. D., Hall, A. J. W., & Locke, J. C. W. (2019). Coordinated circadian timing through the integration of local inputs in Arabidopsis thaliana. PLOS BIOLOGY, 17(8). doi:10.1371/journal.pbio.3000407
Introduction to MATLAB® for Biologists
Webb, C. R., & Domijan, M. (2019). Introduction to MATLAB® for Biologists. Springer International Publishing. doi:10.1007/978-3-030-21337-4
2018
ELONGATED HYPOCOTYL 5 mediates blue light signalling to the Arabidopsis circadian clock
Hajdu, A., Dobos, O., Domijan, M., Balint, B., Nagy, I., Nagy, F., & Kozma-Bognar, L. (2018). ELONGATED HYPOCOTYL 5 mediates blue light signalling to the Arabidopsis circadian clock. PLANT JOURNAL, 96(6), 1242-1254. doi:10.1111/tpj.14106
Fine tuning of hormonal signaling is linked to dormancy status in sweet cherry flower buds
Vimont, N., Schwarzenberg, A., Domijan, M., Donkpegan, A. S. L., Beauvieux, R., le Dantec, L., . . . Wenden, B. (2018). Fine tuning of hormonal signaling is linked to dormancy status in sweet cherry flower buds. doi:10.1101/423871
Coordination of robust single cell rhythms in the Arabidopsis circadian clock via spatial waves of gene expression
Gould, P. D., Domijian, M., Greenwood, M., Tokuda, I. T., Rees, H., Kozma-Bognar, L., . . . Locke, J. C. W. (2018). Coordination of robust single cell rhythms in the Arabidopsis circadian clock via spatial waves of gene expression. ELIFE, 7. doi:10.7554/eLife.31700
2017
Coordination of robust single cell rhythms in the <i>Arabidopsis</i> circadian clock via spatial waves of gene expression
Gould, P., Domijan, M., Greenwood, M., Tokuda, I., Rees, H., Kozma-Bognar, L., . . . Locke, J. C. W. (2017). Coordination of robust single cell rhythms in the <i>Arabidopsis</i> circadian clock via spatial waves of gene expression. doi:10.1101/208900
2016
Phytochromes function as thermosensors in Arabidopsis
Jung, J. -H., Domijan, M., Klose, C., Biswas, S., Ezer, D., Gao, M., . . . Wigge, P. A. (2016). Phytochromes function as thermosensors in Arabidopsis. Science, 354(6314), 886-889. doi:10.1126/science.aaf6005
PeTTSy: a computational tool for perturbation analysis of complex systems biology models.
Domijan, M., Brown, P. E., Shulgin, B. V., & Rand, D. A. (2016). PeTTSy: a computational tool for perturbation analysis of complex systems biology models. BMC Bioinformatics, 17. doi:10.1186/s12859-016-0972-2
2015
Using constraints and their value for optimization of large ODE systems.
Domijan, M., & Rand, D. A. (2015). Using constraints and their value for optimization of large ODE systems. JOURNAL OF THE ROYAL SOCIETY INTERFACE, 12(104), 1-11. doi:10.1098/rsif.2014.1303
ELF3 controls thermoresponsive growth in Arabidopsis.
Box, M. S., Huang, B. E., Domijan, M., Jaeger, K. E., Khattak, A. K., Yoo, S. J., . . . Wigge, P. A. (2015). ELF3 Controls Thermoresponsive Growth in Arabidopsis. CURRENT BIOLOGY, 25(2), 194-199. doi:10.1016/j.cub.2014.10.076
2013
Network balance <i>via</i> CRY signalling controls the <i>Arabidopsis</i> circadian clock over ambient temperatures
Gould, P. D., Ugarte, N., Domijan, M., Costa, M., Foreman, J., MacGregor, D., . . . Hall, A. J. W. (2013). Network balance <i>via</i> CRY signalling controls the <i>Arabidopsis</i> circadian clock over ambient temperatures. MOLECULAR SYSTEMS BIOLOGY, 9. doi:10.1038/msb.2013.7
2012
The interaction graph structure of mass-action reaction networks.
Domijan, M., & Pécou, E. (2012). The interaction graph structure of mass-action reaction networks.. Journal of mathematical biology, 65(2), 375-402. doi:10.1007/s00285-011-0462-0
2011
Balance equations can buffer noisy and sustained environmental perturbations of circadian clocks.
Domijan, M., & Rand, D. A. (2011). Balance equations can buffer noisy and sustained environmental perturbations of circadian clocks.. Interface focus, 1(1), 177-186. doi:10.1098/rsfs.2010.0007
2009
Bistability and oscillations in chemical reaction networks.
Domijan, M., & Kirkilionis, M. (2009). Bistability and oscillations in chemical reaction networks.. Journal of mathematical biology, 59(4), 467-501. doi:10.1007/s00285-008-0234-7
A Definition of Cellular Interface Problems
Kirkilionis, M., Domijan, M., Eigel, M., George, E., Li, M., & Sbano, L. (2009). A Definition of Cellular Interface Problems. In Lecture Notes in Computer Science (pp. 36-62). Springer Berlin Heidelberg. doi:10.1007/978-3-540-95885-7_4
2008
Graph theory and qualitative analysis of reaction networks
Domijan, M., & Kirkilionis, M. (2008). Graph theory and qualitative analysis of reaction networks. Networks & Heterogeneous Media, 3(2), 295-322. doi:10.3934/nhm.2008.3.295
2006
Bistability in chemical reaction networks
Domijan, M. (2006). Bistability in chemical reaction networks. In M. Kirkilionis, U. Kummer, & I. Stoleriu (Eds.), 2nd UniNet Workshop: Data, Networks and Dynamics. Logos Verlag Berlin GmbH.
Dynamical Probing of the Mechanisms Underlying Calcium Oscillations
Domijan, M., Murray, R., & Sneyd, J. (2006). Dynamical Probing of the Mechanisms Underlying Calcium Oscillations. Journal of Nonlinear Science, 16(5), 483-506. doi:10.1007/s00332-005-0744-z