Publications
2023
TNF-α-Mediated Keratinocyte Expression and Release of Matrix Metalloproteinase 9: Putative Mechanism of Pathogenesis in Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis
Olsson-Brown, A., Yip, V., Ogiji, E. D., Jolly, C., Ressel, L., Sharma, A., . . . Carr, D. F. (2023). TNF-α-Mediated Keratinocyte Expression and Release of Matrix Metalloproteinase 9: Putative Mechanism of Pathogenesis in Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis. JOURNAL OF INVESTIGATIVE DERMATOLOGY, 143(6), 1023-+. doi:10.1016/j.jid.2022.11.024
2021
Assessment of the impact of mitochondrial genotype upon drug-induced mitochondrial dysfunction in platelets derived from healthy volunteers
Ball, A. L., Bloch, K. M., Rainbow, L., Liu, X., Kenny, J., Lyon, J. J., . . . Chadwick, A. E. (n.d.). Assessment of the impact of mitochondrial genotype upon drug-induced mitochondrial dysfunction in platelets derived from healthy volunteers. Archives of Toxicology. doi:10.1007/s00204-021-02988-3
2020
Small Non-Coding RNAome of Ageing Chondrocytes
Balaskas, P., Green, J. A., Haqqi, T. M., Dyer, P., Kharaz, Y. A., Fang, Y., . . . Peffers, M. J. (2020). Small Non-Coding RNAome of Ageing Chondrocytes. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 21(16). doi:10.3390/ijms21165675
Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma
Thornton, S., Coupland, S. E., Olohan, L., Sibbring, J. S., Kenny, J. G., Hertz-Fowler, C., . . . Kalirai, H. (2020). Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma. CANCERS, 12(4). doi:10.3390/cancers12041039
Whole-Genome Sequence of Streptomyces kaniharaensis Shomura and Niida SF-557.
Zhu, W., Liu, X., Hughes, M., de Crécy-Lagard, V., & Richards, N. G. J. (2020). Whole-Genome Sequence of Streptomyces kaniharaensis Shomura and Niida SF-557.. Microbiology Resource Announcements, 9(14). doi:10.1128/mra.01434-19
Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild
Pascoal, S., Risse, J. E., Zhang, X., Blaxter, M., Cezard, T., Challis, R. J., . . . Bailey, N. W. (2020). Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild. EVOLUTION LETTERS, 4(1), 19-33. doi:10.1002/evl3.148
2019
Fluconazole Monotherapy Is a Suboptimal Option for Initial Treatment of Cryptococcal Meningitis Because of Emergence of Resistance.
Hope, W., Stone, N. R. H., Johnson, A., McEntee, L., Farrington, N., Santoro-Castelazo, A., . . . Bicanic, T. (2019). Fluconazole Monotherapy Is a Suboptimal Option for Initial Treatment of Cryptococcal Meningitis Because of Emergence of Resistance.. mBio, 10(6). doi:10.1128/mbio.02575-19
Investigating the Cellular Transcriptomic Response Induced by the Makona Variant of Ebola Virus in Differentiated THP-1 Cells
Bosworth, A., Dowall, S. D., Armstrong, S., Liu, X., Dong, X., Bruce, C. B., . . . Hiscox, J. A. (2019). Investigating the Cellular Transcriptomic Response Induced by the Makona Variant of Ebola Virus in Differentiated THP-1 Cells. VIRUSES-BASEL, 11(11). doi:10.3390/v11111023
Immunological observations and transcriptomic analysis of trimester-specific full-term placentas from three Zika virus-infected women
Lum, F. -M., Narang, V., Hue, S., Chen, J., McGovern, N., Rajarethinam, R., . . . Ng, L. F. P. (n.d.). Immunological observations and transcriptomic analysis of trimester-specific full-term placentas from three Zika virus-infected women. Clinical and Translational Immunology, 8(11). doi:10.1002/cti2.1082
2018
Oral iron exacerbates colitis and influences the intestinal microbiome
Mahalhal, A., Williams, J. M., Johnson, S., Ellaby, N., Duckworth, C. A., Burkitt, M. D., . . . Probert, C. S. (2018). Oral iron exacerbates colitis and influences the intestinal microbiome. PLOS ONE, 13(10). doi:10.1371/journal.pone.0202460
Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments
Hicks, N., Liu, X., Gregory, R., Kenny, J., Lucaci, A., Lenzi, L., . . . Duncan, K. R. (2018). Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments. FRONTIERS IN MICROBIOLOGY, 9. doi:10.3389/fmicb.2018.01730
Genomics of habitat choice and adaptive evolution in a deep-sea fish
Gaither, M. R., Gkafas, G. A., de Jong, M., Sarigol, F., Neat, F., Regnier, T., . . . Hoelzel, A. R. (2018). Genomics of habitat choice and adaptive evolution in a deep-sea fish. NATURE ECOLOGY & EVOLUTION, 2(4), 680-687. doi:10.1038/s41559-018-0482-x
Zika Virus Infection Preferentially Counterbalances Human Peripheral Monocyte and/or NK Cell Activity
Lum, F. -M., Lee, D., Chua, T. -K., Tan, J. J. L., Lee, C. Y. P., Liu, X., . . . Ng, L. F. P. (2018). Zika Virus Infection Preferentially Counterbalances Human Peripheral Monocyte and/or NK Cell Activity. MSPHERE, 3(2), 18 pages. doi:10.1128/mSphereDirect.00120-18
Increased socially mediated plasticity in gene expression accompanies rapid adaptive evolution
Pascoal, S., Liu, X., Fang, Y., Paterson, S., Ritchie, M. G., Rockliffe, N., . . . Bailey, N. W. (2018). Increased socially mediated plasticity in gene expression accompanies rapid adaptive evolution. Ecology Letters, 21(4), 546-556. doi:10.1111/ele.12920
2017
Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut
Carroll, M. W., Haldenby, S., Rickett, N. Y., Palyi, B., Garcia-Dorival, I., Liu, X., . . . Hiscox, J. A. (2017). Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut. MSPHERE, 2(04), 19 pages. doi:10.1128/mSphereDirect.00325-17
Deep sequencing of RNA from blood and oral swab samples reveals the presence of nucleic acid from a number of pathogens in patients with acute Ebola virus disease and is consistent with bacterial translocation across the gut
Carroll, M. W., Haldenby, S., Rickett, N. Y., Pályi, B., Garcia-Dorival, I., Liu, X., . . . Hiscox, J. A. (2017). Deep sequencing of RNA from blood and oral swab samples reveals the presence of nucleic acid from a number of pathogens in patients with acute Ebola virus disease and is consistent with bacterial translocation across the gut. mSphere, 2(4). doi:10.1128/mSphereDirect.00325-17
Transcriptomic signatures differentiate survival from fatal outcomes in humans infected with Ebola virus
Liu, X., Speranza, E., Muñoz-Fontela, C., Haldenby, S., Rickett, N., Garcia-Dorival, I., . . . Hiscox, J. (2017). Transcriptomic signatures differentiate survival from fatal outcomes in humans infected with Ebola virus. Genome Biology, 18. doi:10.1186/s13059-016-1137-3
2016
Analysis of transcriptional response to heat stress in Rhazya stricta
Obaid, A. Y., Sabir, J. S. M., Atef, A., Liu, X., Edris, S., El-Domyati, F. M., . . . Jansen, R. K. (2016). Analysis of transcriptional response to heat stress in Rhazya stricta. BMC PLANT BIOLOGY, 16. doi:10.1186/s12870-016-0938-6
A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium <i>Myxococcus xanthus</i>
Wielgoss, S., Didelot, X., Chaudhuri, R. R., Liu, X., Weedall, G. D., Velicer, G. J., & Vos, M. (2016). A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium <i>Myxococcus xanthus</i>. ISME JOURNAL, 10(10), 2468-2477. doi:10.1038/ismej.2016.34
Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community
Gomez, P., Paterson, S., De Meester, L., Liu, X., Lenzi, L., Sharma, M. D., . . . Buckling, A. (2016). Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community. Nature Communications, 7. doi:10.1038/ncomms12453
Rapid evolution and gene expression: a rapidly evolving Mendelian trait that silences field crickets has widespread effects on mRNA and protein expression
Pascoal, S., Liu, X., Ly, T., Fang, Y., Rockliffe, N., Paterson, S., . . . Bailey, N. W. (2016). Rapid evolution and gene expression: a rapidly evolving Mendelian trait that silences field crickets has widespread effects on mRNA and protein expression. JOURNAL OF EVOLUTIONARY BIOLOGY, 29(6), 1234-1246. doi:10.1111/jeb.12865
Copper toxicosis in non-<i>COMMD1</i> Bedlington terriers is associated with metal transport gene <i>ABCA12</i>
Haywood, S., Boursnell, M., Loughran, M. J., Trafford, J., Isherwood, D., Liu, X., . . . Carter, S. D. (2016). Copper toxicosis in non-<i>COMMD1</i> Bedlington terriers is associated with metal transport gene <i>ABCA12</i>. JOURNAL OF TRACE ELEMENTS IN MEDICINE AND BIOLOGY, 35, 83-89. doi:10.1016/j.jtemb.2016.01.015
Revised Genome Sequence of the Purple Photosynthetic Bacterium <i>Blastochloris viridis</i>
Liu, L. -N., Faulkner, M., Liu, X., Huang, F., Darby, A. C., & Hall, N. (2016). Revised Genome Sequence of the Purple Photosynthetic Bacterium <i>Blastochloris viridis</i>. GENOME ANNOUNCEMENTS, 4(1). doi:10.1128/genomeA.01520-15
2015
Transcriptomic Analysis of Shiga-Toxigenic Bacteriophage Carriage Reveals a Profound Regulatory Effect on Acid Resistance in Escherichia coli
Veses-Garcia, M., Liu, X., Rigden, D. J., Kenny, J. G., McCarthy, A. J., & Allison, H. E. (2015). Transcriptomic Analysis of Shiga-Toxigenic Bacteriophage Carriage Reveals a Profound Regulatory Effect on Acid Resistance in Escherichia coli. Applied and Environmental Microbiology, 81(23), 8118-8125. doi:10.1128/AEM.02034-15
2014
Speeding up systems biology simulations of biochemical pathways using condor
Liu, X., Taylor, S. J. E., Mustafee, N., Wang, J., Gao, Q., & Gilbert, D. (2014). Speeding up systems biology simulations of biochemical pathways using condor. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, 26(17), 2727-2742. doi:10.1002/cpe.3161
Transcriptomic profiling of cartilage ageing.
Peffers, M. J., Liu, X., & Clegg, P. D. (2014). Transcriptomic profiling of cartilage ageing.. Genomics data, 2, 27-28. doi:10.1016/j.gdata.2014.03.001
2013
Transcriptomic signatures in cartilage ageing
Peffers, M. J., Liu, X., & Clegg, P. D. (2013). Transcriptomic signatures in cartilage ageing. ARTHRITIS RESEARCH & THERAPY, 15(4). doi:10.1186/ar4278
TRANSCRIPTOME-WIDE EXPRESSION VARIATION ASSOCIATED WITH ENVIRONMENTAL PLASTICITY AND MATING SUCCESS IN CACTOPHILIC <i>DROSOPHILA MOJAVENSIS</i>
Smith, G., Fang, Y., Liu, X., Kenny, J., Cossins, A. R., de Oliveira, C. C., . . . Ritchie, M. G. (2013). TRANSCRIPTOME-WIDE EXPRESSION VARIATION ASSOCIATED WITH ENVIRONMENTAL PLASTICITY AND MATING SUCCESS IN CACTOPHILIC <i>DROSOPHILA MOJAVENSIS</i>. EVOLUTION, 67(7), 1950-1963. doi:10.1111/evo.12082
Transcriptomic signatures in cartilage ageing
Peffers, M. J., Liu, X., & Clegg, P. D. (n.d.). Transcriptomic signatures in cartilage ageing. Arthritis Research & Therapy, 15(4). doi:10.1186/ar4278
2012
From a Single Whole Exome Read to Notions of Clinical Screening: Primary Ciliary Dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula
AlSaadi, M. M., Gaunt, T. R., Boustred, C. R., Guthrie, P. A. I., Liu, X., Lenzi, L., . . . Day, I. N. M. (2012). From a Single Whole Exome Read to Notions of Clinical Screening: Primary Ciliary Dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula. ANNALS OF HUMAN GENETICS, 76, 211-220. doi:10.1111/j.1469-1809.2012.00704.x
From a single whole exome read to notions of clinical screening: primary ciliary dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula
Alsaadi, M. M., Gaunt, T. R., Boustred, C. R., Guthrie, P. A., Liu, X., Lenzi, L., . . . Day, I. N. (2012). From a single whole exome read to notions of clinical screening: primary ciliary dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula. Annals of Human Genetics, 76(3), 211-220.