Publications
2017
Human Ageing Genomic Resources: new and updated databases
Tacutu, R., Thornton, D., Johnson, E., Budovsky, A., Barardo, D., Craig, T., . . . de Magalhaes, J. P. (2017). Human Ageing Genomic Resources: new and updated databases. NUCLEIC ACIDS RESEARCH, 46(D1), D1083-D1090. doi:10.1093/nar/gkx1042
Human Ageing Genomic Resources: 2018 Update
Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus.
Craig, T., Holland, R., D'Amore, R., Johnson, J. R., McCue, H. V., West, A., . . . Caddick, M. X. (2017). Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus.. ACS synthetic biology, 6(12), 2273-2280. doi:10.1021/acssynbio.7b00212
2016
GeneMill: A 21st century platform for innovation
Johnson, J. R., D'Amore, R., Thain, S. C., Craig, T., Mccue, H. V., Hertz-Fowler, C., . . . Hall, A. J. W. (2016). GeneMill: A 21st century platform for innovation. BIOCHEMICAL SOCIETY TRANSACTIONS, 44, 681-683. doi:10.1042/BST20160012
2015
Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging.
Wood, S. H., van Dam, S., Craig, T., Tacutu, R., O'Toole, A., Merry, B. J., & De Magalhaes, J. P. (2015). Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging.. Genome biology, 16(1). doi:10.1186/s13059-015-0847-2
GeneFriends: a human RNA-seq-based gene and transcript co-expression database
van Dam, S., Craig, T., & De Magalhaes, J. P. (2015). GeneFriends: a human RNA-seq-based geneand transcript co-expression database. Nucleic Acids Research, 43(D1), D1124-D1132. doi:10.1093/nar/gku1042
The Digital Ageing Atlas: integrating the diversity of age-related changes into a unified resource
Craig, T., Smelick, C., Tacutu, R., Wuttke, D., Wood, S. H., Stanley, H., . . . De Magalhaes, J. P. (2015). The Digital Ageing Atlas: integrating the diversity of age-related changes into a unified resource. Nucleic Acids Research, 43(D1), D873-D878. doi:10.1093/nar/gku843
Insights into the evolution of longevity from the bowhead whale genome.
Keane, M., Semeiks, J., Webb, A. E., Li, Y. I., Quesada, V., Craig, T., . . . De Magalhaes, J. P. (2015). Insights into the evolution of longevity from the bowhead whale genome.. Cell reports, 10(1), 112-122. doi:10.1016/j.celrep.2014.12.008
2014
The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations
Keane, M., Craig, T., Alfoeldi, J., Berlin, A. M., Johnson, J., Seluanov, A., . . . de Magalhaes, J. P. (2014). The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations. BIOINFORMATICS, 30(24), 3558-3560. doi:10.1093/bioinformatics/btu579
2013
LongevityMap: a database of human genetic variants associated with longevity
Budovsky, A., Craig, T., Wang, J., Tacutu, R., Csordas, A., Lourenco, J., . . . de Magalhaes, J. P. (2013). LongevityMap: a database of human genetic variants associated with longevity. TRENDS IN GENETICS, 29(10), 559-560. doi:10.1016/j.tig.2013.08.003
Whole transcriptome sequencing of the aging rat brain reveals dynamic RNA changes in the dark matter of the genome
Wood, S. H., Craig, T., Li, Y., Merry, B., & de Magalhaes, J. P. (2013). Whole transcriptome sequencing of the aging rat brain reveals dynamic RNA changes in the dark matter of the genome. AGE, 35(3), 763-776. doi:10.1007/s11357-012-9410-1
Human Ageing Genomic Resources: Integrated databases and tools for the biology and genetics of ageing
Tacutu, R., Craig, T., Budovsky, A., Wuttke, D., Lehmann, G., Taranukha, D., . . . de Magalhaes, J. P. (2013). Human Ageing Genomic Resources: Integrated databases and tools for the biology and genetics of ageing. NUCLEIC ACIDS RESEARCH, 41(D1), D1027-D1033. doi:10.1093/nar/gks1155
2012
GeneFriends: An online co-expression analysis tool to identify novel gene targets for aging and complex diseases
van Dam, S., Cordeiro, R., Craig, T., van Dam, J., Wood, S. H., & de Magalhaes, J. P. (2012). GeneFriends: An online co-expression analysis tool to identify novel gene targets for aging and complex diseases. BMC GENOMICS, 13. doi:10.1186/1471-2164-13-535
Dissecting the Gene Network of Dietary Restriction to Identify Evolutionarily Conserved Pathways and New Functional Genes
Wuttke, D., Connor, R., Vora, C., Craig, T., Li, Y., Wood, S., . . . de Magalhaes, J. P. (2012). Dissecting the Gene Network of Dietary Restriction to Identify Evolutionarily Conserved Pathways and New Functional Genes. PLOS GENETICS, 8(8). doi:10.1371/journal.pgen.1002834