Publications
2024
Superspreaders have lower gut microbial alpha-diversity and distinct gut microbial composition in a natural rodent population
A chromosomal mutation is superior to a plasmid-encoded mutation for plasmid fitness cost compensation.
Wright, R. C. T., Wood, A. J., Bottery, M. J., Muddiman, K. J., Paterson, S., Harrison, E., . . . Hall, J. P. J. (2024). A chromosomal mutation is superior to a plasmid-encoded mutation for plasmid fitness cost compensation.. PLoS biology, 22(12), e3002926. doi:10.1371/journal.pbio.3002926
S42 Pseudomonas aeruginosa genetic variants associated with increased exacerbations in bronchiectasis
Hull, R. C., Harrington, N., Gilmour, A., Long, M. B., Stobo, J., Kottara, A., . . . Chalmers, J. D. (2024). S42 Pseudomonas aeruginosa genetic variants associated with increased exacerbations in bronchiectasis. In ‘Where the Wild Things Are’ – Infection and inflammation in bronchiectasis and NTM (pp. A35-A36). BMJ Publishing Group Ltd and British Thoracic Society. doi:10.1136/thorax-2024-btsabstracts.48
Erratum for Child et al., "Comparison of metagenomic and targeted methods for sequencing human pathogenic viruses from wastewater".
Child, H. T., Airey, G., Maloney, D. M., Parker, A., Wild, J., McGinley, S., . . . Bassano, I. (2024). Erratum for Child et al., "Comparison of metagenomic and targeted methods for sequencing human pathogenic viruses from wastewater".. mBio, 15(10), e0255824. doi:10.1128/mbio.02558-24
Ecological and evolutionary mechanisms driving within-patient emergence of antimicrobial resistance
Shepherd, M. J., Fu, T., Harrington, N. E., Kottara, A., Cagney, K., Chalmers, J. D., . . . Brockhurst, M. A. (n.d.). Ecological and evolutionary mechanisms driving within-patient emergence of antimicrobial resistance. Nature Reviews Microbiology. doi:10.1038/s41579-024-01041-1
Global genomic diversity of Pseudomonas aeruginosa in bronchiectasis
Harrington, N. E., Kottara, A., Cagney, K., Shepherd, M. J., Grimsey, E. M., Fu, T., . . . Paterson, S. (2024). Global genomic diversity of Pseudomonas aeruginosa in bronchiectasis. Journal of Infection, 106275. doi:10.1016/j.jinf.2024.106275
Within-host competition sparks pathogen molecular evolution and perpetual microbiota dysbiosis
Examining the stability of viral RNA and DNA in wastewater: Effects of storage time, temperature, and freeze-thaw cycles.
Williams, R. C., Perry, W. B., Lambert-Slosarska, K., Futcher, B., Pellett, C., Richardson-O'Neill, I., . . . Jones, D. L. (2024). Examining the stability of viral RNA and DNA in wastewater: Effects of storage time, temperature, and freeze-thaw cycles.. Water research, 259, 121879. doi:10.1016/j.watres.2024.121879
The bacterial defense system MADS interacts with CRISPR-Cas to limit phage infection and escape
Maestri, A., Pons, B. J., Pursey, E., Chong, C. E., Gandon, S., Custodio, R., . . . Westra, E. R. (2024). The bacterial defense system MADS interacts with CRISPR-Cas to limit phage infection and escape. Cell Host & Microbe. doi:10.1016/j.chom.2024.07.005
Density-dependent network structuring within and across wild animal systems
Wastewater based epidemiology as a public health resource in low- and middle-income settings.
Hamilton, K. A., Wade, M. J., Barnes, K. G., Street, R. A., & Paterson, S. (2024). Wastewater based epidemiology as a public health resource in low- and middle-income settings.. Environmental Pollution, 124045. doi:10.1016/j.envpol.2024.124045
Bacterial discrimination by Fourier transform infrared spectroscopy, MALDI-mass spectrometry and whole-genome sequencing.
McGalliard, R., Muhamadali, H., AlMasoud, N., Haldenby, S., Romero-Soriano, V., Allman, E., . . . Goodacre, R. (2024). Bacterial discrimination by Fourier transform infrared spectroscopy, MALDI-mass spectrometry and whole-genome sequencing.. Future microbiology. doi:10.2217/fmb-2024-0043
2023
The ecology of viruses in urban rodents with a focus on SARS-CoV-2
Fisher, A. M., Airey, G., Liu, Y., Gemmell, M., Thomas, J., Bentley, E. G., . . . Viney, M. (2023). The ecology of viruses in urban rodents with a focus on SARS-CoV-2. EMERGING MICROBES & INFECTIONS, 12(1). doi:10.1080/22221751.2023.2217940
Comparison of metagenomic and targeted methods for sequencing human pathogenic viruses from wastewater
Child, H. T., Airey, G., Maloney, D. M., Parker, A., Wild, J., McGinley, S., . . . Bassano, I. (n.d.). Comparison of metagenomic and targeted methods for sequencing human pathogenic viruses from wastewater. mBio. doi:10.1128/mbio.01468-23
Utility of wastewater genomic surveillance compared to clinical surveillance to track the spread of the SARS-CoV-2 Omicron variant across England.
Brunner, F. S., Payne, A., Cairns, E., Airey, G., Gregory, R., Pickwell, N. D., . . . Paterson, S. (2023). Utility of wastewater genomic surveillance compared to clinical surveillance to track the spread of the SARS-CoV-2 Omicron variant across England.. Water research, 247, 120804. doi:10.1016/j.watres.2023.120804
Utilizing river and wastewater as a SARS-CoV-2 surveillance tool in settings with limited formal sewage systems.
Barnes, K. G., Levy, J. I., Gauld, J., Rigby, J., Kanjerwa, O., Uzzell, C. B., . . . Feasey, N. (2023). Utilizing river and wastewater as a SARS-CoV-2 surveillance tool in settings with limited formal sewage systems.. Nature communications, 14(1), 7883. doi:10.1038/s41467-023-43047-y
Early-life immune expression profiles predict later-life health and fitness in a wild rodent
Wanelik, K. M., Begon, M., Bradley, J. E., Friberg, I. M., Taylor, C. H., Jackson, J. A., & Paterson, S. (2023). Early-life immune expression profiles predict later-life health and fitness in a wild rodent. MOLECULAR ECOLOGY, 32(13), 3471-3482. doi:10.1111/mec.16950
Wastewater monitoring can anchor global disease surveillance systems.
Keshaviah, A., Diamond, M. B., Wade, M. J., Scarpino, S. V., & Global Wastewater Action Group. (2023). Wastewater monitoring can anchor global disease surveillance systems.. The Lancet. Global health, 11(6), e976-e981. doi:10.1016/s2214-109x(23)00170-5
Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples
Bassano, I., Ramachandran, V. K., Khalifa, M. S., Lilley, C. J., Brown, M. R., van Aerle, R., . . . Grimsley, J. M. S. (2023). Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples. Microbial Genomics, 9(4). doi:10.1099/mgen.0.000933
Utilizing river and wastewater as a SARS-CoV-2 surveillance tool to predict trends and identify variants of concern in settings with limited formal sewage systems.
Optimised protocol for monitoring SARS-CoV-2 in wastewater using reverse complement PCR-based whole-genome sequencing
Child, H. T., O'Neill, P. A., Moore, K., Rowe, W., Denise, H., Bass, D., . . . Jeffries, A. R. (2023). Optimised protocol for monitoring SARS-CoV-2 in wastewater using reverse complement PCR-based whole-genome sequencing. PLOS ONE, 18(4). doi:10.1371/journal.pone.0284211
Discrete patterns of microbiome variability across timescales in a wild rodent population
Fenn, J., Taylor, C., Goertz, S., Wanelik, K. M. M., Paterson, S., Begon, M., . . . Bradley, J. (2023). Discrete patterns of microbiome variability across timescales in a wild rodent population. BMC MICROBIOLOGY, 23(1). doi:10.1186/s12866-023-02824-x
Living with chronic infection: Persistent immunomodulation during avirulent haemoparasitic infection in a wild rodent
Taylor, C. H. H., Friberg, I. M. M., Jackson, J. A. A., Arriero, E., Begon, M., Wanelik, K. M. M., . . . Bradley, J. E. E. (2023). Living with chronic infection: Persistent immunomodulation during avirulent haemoparasitic infection in a wild rodent. MOLECULAR ECOLOGY, 32(5), 1197-1210. doi:10.1111/mec.16819
Effects of an IgE receptor polymorphism acting on immunity, susceptibility to infection, and reproduction in a wild rodent
Wanelik, K. M., Begon, M., Bradley, J. E., Friberg, I. M., Jackson, J. A., Taylor, C. H., & Paterson, S. (2023). Effects of an IgE receptor polymorphism acting on immunity, susceptibility to infection, and reproduction in a wild rodent. ELIFE, 12. doi:10.7554/eLife.77666
Whole-genome Analysis Reveals Contrasting Relationships Among Nuclear and Mitochondrial Genomes Between Three Sympatric Bat Species
Laine, V. N., Savilammi, T., Wahlberg, N., Meramo, K., Ossa, G., Johnson, J. S., . . . Lilley, T. M. (2023). Whole-genome Analysis Reveals Contrasting Relationships Among Nuclear and Mitochondrial Genomes Between Three Sympatric Bat Species. GENOME BIOLOGY AND EVOLUTION, 15(1). doi:10.1093/gbe/evac175
A major locus confers triclabendazole resistance in Fasciola hepatica and shows dominant inheritance
Beesley, N. J., Cwiklinski, K., Allen, K., Hoyle, R. C., Spithill, T. W., La Course, E. J., . . . Hodgkinson, J. E. (n.d.). A major locus confers triclabendazole resistance in Fasciola hepatica and shows dominant inheritance. PLOS Pathogens, 19(1), e1011081. doi:10.1371/journal.ppat.1011081
2022
City-wide wastewater genomic surveillance through the successive emergence of SARS-CoV-2 Alpha and Delta variants
Brunner, F. S., Brown, M. R., Bassano, I., Denise, H., Khalifa, M. S., Wade, M. J., . . . Paterson, S. (2022). City-wide wastewater genomic surveillance through the successive emergence of SARS-CoV-2 Alpha and Delta variants. WATER RESEARCH, 226. doi:10.1016/j.watres.2022.119306
Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021.
Smallman-Raynor, M. R., Cliff, A. D., & COVID-19 Genomics UK (COG-UK) Consortium. (2022). Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021.. Epidemiology and infection, 150, e145. doi:10.1017/s0950268822001285
Polymicrobial infections can select against <i>Pseudomonas aeruginosa</i> mutators because of quorum-sensing trade-offs
Lujan, A. M., Paterson, S., Hesse, E., Sommer, L. M., Marvig, R. L., Sharma, M. D., . . . Buckling, A. (2022). Polymicrobial infections can select against <i>Pseudomonas aeruginosa</i> mutators because of quorum-sensing trade-offs. NATURE ECOLOGY & EVOLUTION, 6(7), 979-+. doi:10.1038/s41559-022-01768-1
A comparison of precipitation and filtration-based SARS-CoV-2 recovery methods and the influence of temperature, turbidity, and surfactant load in urban wastewater
Kevill, J. L., Pellett, C., Farkas, K., Brown, M. R., Bassano, I., Denise, H., . . . Jones, D. L. (2022). A comparison of precipitation and filtration-based SARS-CoV-2 recovery methods and the influence of temperature, turbidity, and surfactant load in urban wastewater. SCIENCE OF THE TOTAL ENVIRONMENT, 808. doi:10.1016/j.scitotenv.2021.151916
A collective statement in support of saving pangolins.
Choo, S. W., Chong, J. L., Gaubert, P., Hughes, A. C., O'Brien, S., Chaber, A. -L., . . . Aziz, M. A. (2022). A collective statement in support of saving pangolins.. The Science of the total environment, 824, 153666. doi:10.1016/j.scitotenv.2022.153666
Pollution induces epigenetic effects that are stably transmitted across multiple generations
Harney, E., Paterson, S., Collin, H., Chan, B. H. K., Bennett, D., & Plaistow, S. J. (2022). Pollution induces epigenetic effects that are stably transmitted across multiple generations. EVOLUTION LETTERS. doi:10.1002/ev13.273
Rapid decline of adaptation of <i>Pseudomonas fluorescens</i> to soil biotic environment
Gomez, P., Hall, A. R., Paterson, S., & Buckling, A. (2022). Rapid decline of adaptation of <i>Pseudomonas fluorescens</i> to soil biotic environment. BIOLOGY LETTERS, 18(3). doi:10.1098/rsbl.2021.0593
2021
Early-life immune expression profiles predict later life health and fitness in a wild rodent
Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation
Hall, J. P. J., Wright, R. C. T., Harrison, E., Muddiman, K. J., Wood, A. J., Paterson, S., & Brockhurst, M. A. (n.d.). Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation. PLOS Biology, 19(10), e3001225. doi:10.1371/journal.pbio.3001225
Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK
Hillary, L. S., Farkas, K., Maher, K. H., Lucaci, A., Thorpe, J., Distaso, M. A., . . . Jones, D. L. (2021). Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK. WATER RESEARCH, 200. doi:10.1016/j.watres.2021.117214
Plasmid fitness costs are caused by specific genetic conflicts
Sub-ARTIC Illumina SARS-CoV-2 Spike sequencing protocol (LoCost) V3.2 v1
Horsburgh, G., Parsons, P., Maher, K., Paterson, S., & Burke, T. (2021). Sub-ARTIC Illumina SARS-CoV-2 Spike sequencing protocol (LoCost) V3.2 v1. doi:10.17504/protocols.io.btpjnmkn
Transmission, adaptation and geographical spread of the<i> Pseudomonas</i><i> aeruginosa</i> Liverpool epidemic strain
Moore, M. P., Lamont, I. L., Williams, D., Paterson, S., Kukavica-Ibrulj, I., Tucker, N. P., . . . Winstanley, C. (2021). Transmission, adaptation and geographical spread of the<i> Pseudomonas</i><i> aeruginosa</i> Liverpool epidemic strain. MICROBIAL GENOMICS, 7(3). doi:10.1099/mgen.0.000511
Compost spatial heterogeneity promotes evolutionary diversification of a bacterium
van Houte, S., Padfield, D., Gomez, P., Lujan, A. M., Brockhurst, M. A., Paterson, S., & Buckling, A. (2021). Compost spatial heterogeneity promotes evolutionary diversification of a bacterium. JOURNAL OF EVOLUTIONARY BIOLOGY, 34(2), 246-255. doi:10.1111/jeb.13722
Transcriptome and Secretome Analysis of Intra-Mammalian Life-Stages of Calicophoron daubneyi Reveals Adaptation to a Unique Host Environment.
Huson, K. M., Atcheson, E., Oliver, N. A. M., Best, P., Barley, J. P., Hanna, R. E. B., . . . Robinson, M. W. (2021). Transcriptome and Secretome Analysis of Intra-Mammalian Life-Stages of Calicophoron daubneyi Reveals Adaptation to a Unique Host Environment.. Molecular & cellular proteomics : MCP, 20, 100055. doi:10.1074/mcp.ra120.002175
2020
Quantifying multivariate genotype-by-environment interactions, evolutionary potential and its context-dependence in natural populations of the water flea,<i>Daphnia magna</i>
Brunner, F., Reynolds, A., Wilson, I., Price, S., Paterson, S., Atkinson, D., & Plaistow, S. (2020). Quantifying multivariate genotype-by-environment interactions, evolutionary potential and its context-dependence in natural populations of the water flea,<i>Daphnia magna</i>. doi:10.1101/2020.12.28.424558
Evolution of diversity explains the impact of pre-adaptation of a focal species on the structure of a natural microbial community
Padfield, D., Vujakovic, A., Paterson, S., Griffiths, R., Buckling, A., & Hesse, E. (2020). Evolution of diversity explains the impact of pre-adaptation of a focal species on the structure of a natural microbial community. ISME JOURNAL, 14(11), 2877-2889. doi:10.1038/s41396-020-00755-3
Resource quality determines the evolution of resistance and its genetic basis
Roberts, K. E., Meaden, S., Sharpe, S., Kay, S., Doyle, T., Wilson, D., . . . Boots, M. (2020). Resource quality determines the evolution of resistance and its genetic basis. MOLECULAR ECOLOGY, 29(21), 4128-4142. doi:10.1111/mec.15621
Transcriptome and secretome analysis of intra-mammalian life-stages of the emerging helminth pathogen, Calicophoron daubneyi reveals adaptation to a unique host environment.
Huson, K. M., Atcheson, E., Oliver, N. A. M., Best, P., Barley, J. P., Hanna, R. E. B., . . . Robinson, M. W. (n.d.). Transcriptome and secretome analysis of intra-mammalian life-stages of the emerging helminth pathogen, Calicophoron daubneyi reveals adaptation to a unique host environment.. Molecular & Cellular Proteomics, mcp.RA120.002175. doi:10.1074/mcp.ra120.002175
Genome-Wide Changes in Genetic Diversity in a Population of <i>Myotis lucifugus</i> Affected by White-Nose Syndrome
Lilley, T. M., Wilson, I. W., Field, K. A., Reeder, D. M., Vodzak, M. E., Turner, G. G., . . . Paterson, S. (2020). Genome-Wide Changes in Genetic Diversity in a Population of <i>Myotis lucifugus</i> Affected by White-Nose Syndrome. G3-GENES GENOMES GENETICS, 10(6), 2007-2020. doi:10.1534/g3.119.400966
Transcriptome-wide analysis reveals different categories of response to a standardised immune challenge in a wild rodent
Wanelik, K. M., Begon, M., Arriero, E., Bradley, J. E., Friberg, I. M., Jackson, J. A., . . . Paterson, S. (2020). Transcriptome-wide analysis reveals different categories of response to a standardised immune challenge in a wild rodent. Scientific Reports, 10(1). doi:10.1038/s41598-020-64307-7
The effect of phage genetic diversity on bacterial resistance evolution
Broniewski, J. M., Meaden, S., Paterson, S., Buckling, A., & Westra, E. R. (2020). The effect of phage genetic diversity on bacterial resistance evolution. The ISME Journal: multidisciplinary journal of microbial ecology, 14(3), 828-836. doi:10.1038/s41396-019-0577-7
Community relationships in the dry skin microbiome
Arnold, D., Cawley, A., Darby, A. C., Falciani, F., Grimshaw, S. G., Hawkins, S. S., . . . Paterson, S. (2020). Community relationships in the dry skin microbiome. In JOURNAL OF THE AMERICAN ACADEMY OF DERMATOLOGY Vol. 83 (pp. AB59). Retrieved from https://www.webofscience.com/
Transposable temperate phages promote the evolution of divergent social strategies in Pseudomonas aeruginosa populations
O'Brien, S., Kummerli, R., Paterson, S., Winstanley, C., & Brockhurst, M. (2020). Transposable temperate phages promote the evolution of divergent social strategies in Pseudomonas aeruginosa populations. Access Microbiology, 2(1). doi:10.1099/acmi.mim2019.po0004
2019
Transposable temperate phages promote the evolution of divergent social strategies in Pseudomonas aeruginosa populations.
O'Brien, S., Kümmerli, R., Paterson, S., Winstanley, C., & Brockhurst, M. A. (2019). Transposable temperate phages promote the evolution of divergent social strategies in Pseudomonas aeruginosa populations.. Proceedings. Biological sciences, 286(1912), 20191794. doi:10.1098/rspb.2019.1794
Resistance is futile: RNA-sequencing reveals differing responses to bat fungal pathogen in Nearctic <i>Myotis lucifugus</i> and Palearctic <i>Myotis myotis</i>
Lilley, T. M., Prokkola, J. M., Blomberg, A. S., Paterson, S., Johnson, J. S., Turner, G. G., . . . Field, K. A. (2019). Resistance is futile: RNA-sequencing reveals differing responses to bat fungal pathogen in Nearctic <i>Myotis lucifugus</i> and Palearctic <i>Myotis myotis</i>. OECOLOGIA, 191(2), 295-309. doi:10.1007/s00442-019-04499-6
Refugia and anthelmintic resistance: Concepts and challenges
Hodgkinson, J. E., Kaplan, R. M., Kenyon, F., Morgan, E. R., Park, A. W., Paterson, S., . . . Devaney, E. (n.d.). Refugia and anthelmintic resistance: Concepts and challenges. International Journal for Parasitology: Drugs and Drug Resistance, 10, 51-57. doi:10.1016/j.ijpddr.2019.05.001
Decomposing variation in immune response in a wild rodent population
Transposable temperate phages promote the evolution of divergent social strategies in<i>Pseudomonas aeruginosa</i>populations
Genetic diversity and gene family expansions in members of the genus Entamoeba.
Wilson, I. W., Weedall, G. D., Lorenzi, H., Howcroft, T., Hon, C. -C., Deloger, M., . . . Hall, N. (2019). Genetic diversity and gene family expansions in members of the genus Entamoeba.. Genome biology and evolution. doi:10.1093/gbe/evz009
2018
Draft Genome Assembly of the Poultry Red Mite, <i>Dermanyssus gallinae</i>
Burgess, S. T. G., Bartley, K., Nunn, F., Wright, H. W., Hughes, M., Gemmell, M., . . . Nisbet, A. J. (2018). Draft Genome Assembly of the Poultry Red Mite, <i>Dermanyssus gallinae</i>. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 7(18). doi:10.1128/MRA.01221-18
Physiological, but not fitness, effects of two interacting haemoparasitic infections in a wild rodent
Taylor, C. H., Wanelik, K. M., Friberg, I. M., Lowe, A., Hall, A. J., Ralli, C., . . . Bradley, J. E. (2018). Physiological, but not fitness, effects of two interacting haemoparasitic infections in a wild rodent. INTERNATIONAL JOURNAL FOR PARASITOLOGY, 48(6), 463-471. doi:10.1016/j.ijpara.2017.11.006
Profiling G protein-coupled receptors of <i>Fasciola hepatica</i> identifies orphan rhodopsins unique to phylum Platyhelminthes
McVeigh, P., McCammick, E., McCusker, P., Wells, D., Hodgkinson, J., Paterson, S., . . . Maule, A. G. (2018). Profiling G protein-coupled receptors of <i>Fasciola hepatica</i> identifies orphan rhodopsins unique to phylum Platyhelminthes. INTERNATIONAL JOURNAL FOR PARASITOLOGY-DRUGS AND DRUG RESISTANCE, 8(1), 87-103. doi:10.1016/j.ijpddr.2018.01.001
Transmission and lineage displacement drive rapid population genomic flux in cystic fibrosis airway infections of a Pseudomonas aeruginosa epidemic strain
Williams, D., Fothergill, J. L., Evans, B., Caples, J., Haldenby, S., Walshaw, M. J., . . . Paterson, S. (2018). Transmission and lineage displacement drive rapid population genomic flux in cystic fibrosis airway infections of a Pseudomonas aeruginosa epidemic strain. MICROBIAL GENOMICS, 4(3). doi:10.1099/mgen.0.000167
Increased socially mediated plasticity in gene expression accompanies rapid adaptive evolution
Pascoal, S., Liu, X., Fang, Y., Paterson, S., Ritchie, M. G., Rockliffe, N., . . . Bailey, N. W. (2018). Increased socially mediated plasticity in gene expression accompanies rapid adaptive evolution. Ecology Letters, 21(4), 546-556. doi:10.1111/ele.12920
A candidate tolerance gene identified in a natural population of field voles (Microtus agrestis).
Wanelik, K. M., Begon, M., Birtles, R. J., Bradley, J. E., Friberg, I. M., Jackson, J. A., . . . Paterson, S. (2018). A candidate tolerance gene identified in a natural population of field voles (<i>Microtus agrestis</i>). MOLECULAR ECOLOGY, 27(4), 1044-1052. doi:10.1111/mec.14476
2017
Profiling G protein-coupled receptors of <i>Fasciola hepatica</i> identifies orphan rhodopsins unique to phylum Platyhelminthes
Offspring development and life-history variation in a water flea depends upon clone-specific integration of genetic, non-genetic and environmental cues
Harney, E., Paterson, S., & Plaistow, S. (2017). Offspring development and life-history variation in a water flea depends upon clone-specific integration of genetic, non-genetic and environmental cues. Functional Ecology, 31(10), 1996-2007. doi:10.1111/1365-2435.12887
Positive selection inhibits gene mobilization and transfer in soil bacterial communities
Hall, J. P. J., Williams, D., Paterson, S., Harrison, E., & Brockhurst, M. A. (2017). Positive selection inhibits gene mobilization and transfer in soil bacterial communities. Nature Ecology and Evolution, 1, 1348-1353. doi:10.1038/s41559-017-0250-3
From the animal house to the field: Are there consistent individual differences in immunological profile in wild populations of field voles (<i>Microtus agrestis</i>)?
Arriero, E., Wanelik, K. M., Birtles, R. J., Bradley, J. E., Jackson, J. A., Paterson, S., & Begon, M. (2017). From the animal house to the field: Are there consistent individual differences in immunological profile in wild populations of field voles (<i>Microtus agrestis</i>)?. PLOS ONE, 12(8). doi:10.1371/journal.pone.0183450
Adaptation to public goods cheats in Pseudomonas aeruginosa
O'Brien, S., Lujan, A. M., Paterson, S., Cant, M. A., & Buckling, A. (2017). Adaptation to public goods cheats in Pseudomonas aeruginosa. Proceedings of the Royal Society of London: Biological Sciences, 284(1859). doi:10.1098/rspb.2017.1089
Endemic Hantavirus in Field Voles, Northern England
Thomason, A. G., Begon, M., Bradley, J. E., Paterson, S., & Jackson, J. A. (2017). Endemic Hantavirus in Field Voles, Northern England. EMERGING INFECTIOUS DISEASES, 23(6), 1033-1035. doi:10.3201/eid2306.161607
Conflicting selection alters the trajectory of molecular evolution in a tripartite bacteria-plasmid-phage interaction
Harrison, E., Hall, J. P. J., Paterson, S., Spiers, A. J., & Brockhurst, M. A. (2017). Conflicting selection alters the trajectory of molecular evolution in a tripartite bacteria-plasmid-phage interaction. MOLECULAR ECOLOGY, 26(10), 2757-2764. doi:10.1111/mec.14080
Co-evolutionary dynamics between a defensive microbe and a pathogen driven by fluctuating selection
Ford, S. A., Williams, D., Paterson, S., & King, K. C. (2017). Co-evolutionary dynamics between a defensive microbe and a pathogen driven by fluctuating selection. MOLECULAR ECOLOGY, 26(7), 1778-1789. doi:10.1111/mec.13906
High virulence sub-populations in <i>Pseudomonas aeruginosa</i> long-term cystic fibrosis airway infections
O'Brien, S., Williams, D., Fothergill, J. L., Paterson, S., Winstanley, C., & Brockhurst, M. A. (2017). High virulence sub-populations in <i>Pseudomonas aeruginosa</i> long-term cystic fibrosis airway infections. BMC MICROBIOLOGY, 17. doi:10.1186/s12866-017-0941-6
Fasciola hepatica demonstrates high levels of genetic diversity, a lack of population structure and high gene flow: possible implications for drug resistance
Beesley, N. J., Williams, D. J. L., Paterson, S., & Hodgkinson, J. (2017). Fasciola hepatica demonstrates high levels of genetic diversity, a lack of population structure and high gene flow: possible implications for drug resistance. International Journal for Parasitology, 47(1), 11-20. doi:10.1016/j.ijpara.2016.09.007
2016
Genomic Signatures of Historical Allopatry and Ecological Divergence in an Island Lizard
Brown, R. P., Paterson, S., & Risse, J. (2016). Genomic Signatures of Historical Allopatry and Ecological Divergence in an Island Lizard. GENOME BIOLOGY AND EVOLUTION, 8(11), 3618-3626. doi:10.1093/gbe/evw268
Exploring and Expanding the Fatty-Acid-Binding Protein Superfamily in <i>Fasciola</i> Species
Morphew, R. M., Wilkinson, T. J., Mackintosh, N., Jahndel, V., Paterson, S., McVeigh, P., . . . Brophy, P. M. (2016). Exploring and Expanding the Fatty-Acid-Binding Protein Superfamily in <i>Fasciola</i> Species. JOURNAL OF PROTEOME RESEARCH, 15(9), 3308-3321. doi:10.1021/acs.jproteome.6b00331
Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community
Gomez, P., Paterson, S., De Meester, L., Liu, X., Lenzi, L., Sharma, M. D., . . . Buckling, A. (2016). Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community. Nature Communications, 7. doi:10.1038/ncomms12453
Rapid evolution of microbe-mediated protection against pathogens in a worm host
King, K. C., Brockhurst, M. A., Vasieva, O., Paterson, S., Betts, A., Ford, S. A., . . . Hurst, G. D. D. (2016). Rapid evolution of microbe-mediated protection against pathogens in a worm host. ISME Journal, 10, 1915-1924. doi:10.1038/ismej.2015.259
Temperate phages both mediate and drive adaptive evolution in pathogen biofilms
Davies, E. V., James, C. E., Williams, D., O'Brien, S., Fothergill, J. L., Haldenby, S., . . . Brockhurst, M. A. (2016). Temperate phages both mediate and drive adaptive evolution in pathogen biofilms. Proceedings of the National Academy of Sciences of the United States of America, 113(29), 8266-8271. doi:10.1073/pnas.1520056113
Rapid evolution and gene expression: a rapidly evolving Mendelian trait that silences field crickets has widespread effects on mRNA and protein expression
Pascoal, S., Liu, X., Ly, T., Fang, Y., Rockliffe, N., Paterson, S., . . . Bailey, N. W. (2016). Rapid evolution and gene expression: a rapidly evolving Mendelian trait that silences field crickets has widespread effects on mRNA and protein expression. JOURNAL OF EVOLUTIONARY BIOLOGY, 29(6), 1234-1246. doi:10.1111/jeb.12865
Rapid compensatory evolution promotes the survival of conjugative plasmids.
Harrison, E., Dytham, C., Hall, J. P. J., Guymer, D., Spiers, A. J., Paterson, S., & Brockhurst, M. A. (2016). Rapid compensatory evolution promotes the survival of conjugative plasmids.. Mobile genetic elements, 6(3), e1179074. doi:10.1080/2159256x.2016.1179074
The diversity-generating benefits of a prokaryotic adaptive immune system
van Houte, S., Ekroth, A. K. E., Broniewski, J. M., Chabas, H., Ashby, B., Bondy-Denomy, J., . . . Westra, E. R. (2016). The diversity-generating benefits of a prokaryotic adaptive immune system. Nature, 532, 385-388. doi:10.1038/nature17436
Refined analyses suggest that recombination is a minor source of genomic diversity in Pseudomonas aeruginosa chronic cystic fibrosis infections
Williams, D., Paterson, S., Brockhurst, M. A., & Winstanley, C. (2016). Refined analyses suggest that recombination is a minor source of genomic diversity in <i>Pseudomonas aeruginosa</i> chronic cystic fibrosis infections. MICROBIAL GENOMICS, 2(3). doi:10.1099/mgen.0.000051
2015
Environmentally co‐occurring mercury resistance plasmids are genetically and phenotypically diverse and confer variable context‐dependent fitness effects
Hall, J. P. J., Harrison, E., Lilley, A. K., Paterson, S., Spiers, A. J., & Brockhurst, M. A. (2015). Environmentally co‐occurring mercury resistance plasmids are genetically and phenotypically diverse and confer variable context‐dependent fitness effects. Environmental Microbiology, 17(12), 5008-5022. doi:10.1111/1462-2920.12901
The Extracellular Vesicles of the Helminth Pathogen, <i>Fasciola hepatica</i>: Biogenesis Pathways and Cargo Molecules Involved in Parasite Pathogenesis
Cwiklinski, K., de la Torre-Escudero, E., Trelis, M., Bernal, D., Dufresne, P. J., Brennan, G. P., . . . Robinson, M. W. (2015). The Extracellular Vesicles of the Helminth Pathogen, <i>Fasciola hepatica</i>: Biogenesis Pathways and Cargo Molecules Involved in Parasite Pathogenesis. MOLECULAR & CELLULAR PROTEOMICS, 14(12), 3258-3273. doi:10.1074/mcp.M115.053934
The Genetic Basis of Kin Recognition in a Cooperatively Breeding Mammal
Green, J., Holmes, A., Davidson, A., Paterson, S., Stockley, P., Beynon, R., & Hurst, J. (2015). The Genetic Basis of Kin Recognition in a Cooperatively Breeding Mammal. Current Biology, 25(20), 2631-2641. doi:10.1016/j.cub.2015.08.045
Plasmid carriage can limit bacteria - phage coevolution
Harrison, E., Truman, J., Wright, R., Spiers, A. J., Paterson, S., & Brockhurst, M. A. (2015). Plasmid carriage can limit bacteria - phage coevolution. BIOLOGY LETTERS, 11(8). doi:10.1098/rsbl.2015.0361
Parallel Compensatory Evolution Stabilizes Plasmids across the Parasitism-Mutualism Continuum
Harrison, E., Guymer, D., Spiers, A. J., Paterson, S., & Brockhurst, M. A. (2015). Parallel Compensatory Evolution Stabilizes Plasmids across the Parasitism-Mutualism Continuum. Current Biology, 25(15), 2034-2039. doi:10.1016/j.cub.2015.06.024
Bacteriophages Limit the Existence Conditions for Conjugative Plasmids
Harrison, E., Wood, A. J., Dytham, C., Pitchford, J. W., Truman, J., Spiers, A., . . . Brockhurst, M. A. (2015). Bacteriophages Limit the Existence Conditions for Conjugative Plasmids. MBIO, 6(3). doi:10.1128/mBio.00586-15
77 Whole genome sequencing of multiple isolates of the Pseudomonas aeruginosa Liverpool epidemic strain reveals transmission and geographical clustering
Moore, M., Williams, D., Paterson, S., Tucker, N., Kenna, D., Turton, J., . . . Winstanley, C. (2015). 77 Whole genome sequencing of multiple isolates of the Pseudomonas aeruginosa Liverpool epidemic strain reveals transmission and geographical clustering. Journal of Cystic Fibrosis, 14, S77. doi:10.1016/s1569-1993(15)30254-x
Characterisation of a novel panel of polymorphic microsatellite loci for the liver fluke, Fasciola hepatica, using a next generation sequencing approach
Cwiklinski, K., Allen, K., LaCourse, J., Williams, D., Paterson, S., & Hodgkinson, J. (2015). Characterisation of a novel panel of polymorphic microsatellite loci for the liver fluke, Fasciola hepatica, using a next generation sequencing approach. Infection, Genetics and Evolution, 32, 298-304. doi:10.1016/j.meegid.2015.03.014
The Fasciola hepatica genome: gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution
Cwiklinski, K., Dalton, J. P., Dufresne, P. J., La Course, J., Williams, D., Hodgkinson, J., & Paterson, S. (2015). The Fasciola hepatica genome: gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution. Genome Biology, 16. doi:10.1186/s13059-015-0632-2
Transcriptional changes during <i>Daphnia pulex</i> development indicate that the maturation decision resembles a rate more than a threshold
Harney, E., Plaistow, S. J., & Paterson, S. (2015). Transcriptional changes during <i>Daphnia pulex</i> development indicate that the maturation decision resembles a rate more than a threshold. JOURNAL OF EVOLUTIONARY BIOLOGY, 28(4), 944-958. doi:10.1111/jeb.12624
Identification and characterisation of 17 polymorphic candidate genes for response to parasitic nematode (<i>Trichostrongylus tenuis</i>) infection in red grouse (<i>Lagopus lagopus scotica</i>)
Wenzel, M. A., Webster, L. M. I., Paterson, S., & Piertney, S. B. (2015). Identification and characterisation of 17 polymorphic candidate genes for response to parasitic nematode (<i>Trichostrongylus tenuis</i>) infection in red grouse (<i>Lagopus lagopus scotica</i>). CONSERVATION GENETICS RESOURCES, 7(1), 23-28. doi:10.1007/s12686-014-0323-4
Divergent, CoexistingPseudomonas aeruginosaLineages in Chronic Cystic Fibrosis Lung Infections
Williams, D., Evans, B., Haldenby, S., Walshaw, M. J., Brockhurst, M. A., Winstanley, C., & Paterson, S. (2015). Divergent, CoexistingPseudomonas aeruginosaLineages in Chronic Cystic Fibrosis Lung Infections. American Journal of Respiratory and Critical Care Medicine, 191(7), 775-785. doi:10.1164/rccm.201409-1646OC
2014
Running with the Red Queen: the role of biotic conflicts in evolution
Brockhurst, M. A., Chapman, T., King, K. C., Mank, J. E., Paterson, S., & Hurst, G. D. D. (2014). Running with the Red Queen: the role of biotic conflicts in evolution. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 281(1797). doi:10.1098/rspb.2014.1382
An immunological marker of tolerance to infection in wild rodents
Jackson, J. A., Hall, A. J., Friberg, I. M., Ralli, C., Lowe, A., Zawadzka, M., . . . Begon, M. (2014). An immunological marker of tolerance to infection in wild rodents. PLOS Biology, 12(7), 13 pages. doi:10.1371/journal.pbio.1001901
WS21.4 Use of genome sequencing to study population diversification and transmission of a Pseudomonas aeruginosa epidemic strain
Winstanley, C., Williams, D., Fothergill, J. L., Evans, B., Haldenby, S., Loman, N., . . . Paterson, S. (2014). WS21.4 Use of genome sequencing to study population diversification and transmission of a Pseudomonas aeruginosa epidemic strain. Journal of Cystic Fibrosis, 13, S41. doi:10.1016/s1569-1993(14)60129-6
Ovine IgA-reactive proteins from Teladorsagia circumcincta infective larvae
Ellis, S., Matthews, J. B., Shaw, D. J., Paterson, S., McWilliam, H. E. G., Inglis, N. F., & Nisbet, A. J. (2014). Ovine IgA-reactive proteins from Teladorsagia circumcincta infective larvae. INTERNATIONAL JOURNAL FOR PARASITOLOGY, 44(10), 743-750. doi:10.1016/j.ijpara.2014.05.007
2013
Extensive diversification is a common feature of <i>Pseudomonas aeruginosa</i> populations during respiratory infections in cystic fibrosis
Ashish, A., Paterson, S., Mowat, E., Fothergill, J. L., Walshaw, M. J., & Winstanley, C. (2013). Extensive diversification is a common feature of <i>Pseudomonas aeruginosa</i> populations during respiratory infections in cystic fibrosis. JOURNAL OF CYSTIC FIBROSIS, 12(6), 790-793. doi:10.1016/j.jcf.2013.04.003
Wild rodents as a model to discover genes and pathways underlying natural variation in infectious disease susceptibility
Turner, A. K., & Paterson, S. (2013). Wild rodents as a model to discover genes and pathways underlying natural variation in infectious disease susceptibility. PARASITE IMMUNOLOGY, 35(11), 386-395. doi:10.1111/pim.12036
Identification of putative markers of triclabendazole resistance by a genome-wide analysis of genetically recombinant <i>Fasciola hepatica</i>
Hodgkinson, J., Cwiklinski, K., Beesley, N. J., Paterson, S., & Williams, D. J. L. (2013). Identification of putative markers of triclabendazole resistance by a genome-wide analysis of genetically recombinant <i>Fasciola hepatica</i>. PARASITOLOGY, 140(12), 1523-1533. doi:10.1017/S0031182013000528
Transcriptome analysis of a parasitic clade V nematode: Comparative analysis of potential molecular anthelmintic targets in <i>Cylicostephanus goldi</i>
Cwiklinski, K., Merga, J. Y., Lake, S. L., Hartley, C., Matthews, J. B., Paterson, S., & Hodgkinson, J. E. (2013). Transcriptome analysis of a parasitic clade V nematode: Comparative analysis of potential molecular anthelmintic targets in <i>Cylicostephanus goldi</i>. INTERNATIONAL JOURNAL FOR PARASITOLOGY, 43(11), 917-927. doi:10.1016/j.ijpara.2013.06.010
Transcriptome analysis of a parasitic clade V nematode: Comparative analysis of potential molecular anthelmintic targets in Cylicostephanus goldi
Cwiklinski, K., Merga, J. Y., Lake, S. L., Hartley, C., Matthews, J. B., Paterson, S., & Hodgkinson, J. E. (2013). Transcriptome analysis of a parasitic clade V nematode: Comparative analysis of potential molecular anthelmintic targets in Cylicostephanus goldi. International Journal for Parasitology, 43(11), 917-927. doi:10.1016/j.ijpara.2013.06.010
Transcriptome analysis of a parasitic clade V nematode: comparative analysis of potential molecular anthelmintic targets in Cylicostephanus goldi.
Cwiklinski, K., Merga, J. Y., Lake, S. L., Hartley, C., Matthews, J. B., Paterson, S., & Hodgkinson, J. E. (2013). Transcriptome analysis of a parasitic clade V nematode: comparative analysis of potential molecular anthelmintic targets in Cylicostephanus goldi.. International journal for parasitology, 43(11), 917-927. doi:10.1016/j.ijpara.2013.06.010
Sub-inhibitory concentrations of some antibiotics can drive diversification of <i>Pseudomonas aeruginosa</i> populations in artificial sputum medium
Wright, E. A., Fothergill, J. L., Paterson, S., Brockhurst, M. A., & Winstanley, C. (2013). Sub-inhibitory concentrations of some antibiotics can drive diversification of <i>Pseudomonas aeruginosa</i> populations in artificial sputum medium. BMC MICROBIOLOGY, 13. doi:10.1186/1471-2180-13-170
Baculum morphology predicts reproductive success of male house mice under sexual selection
Stockley, P., Ramm, S. A., Sherborne, A. L., Thom, M. D. F., Paterson, S., & Hurst, J. L. (2013). Baculum morphology predicts reproductive success of male house mice under sexual selection. BMC BIOLOGY, 11. doi:10.1186/1741-7007-11-66
The immunology and ecology of co-infection
Paterson, S. (2013). The immunology and ecology of co-infection. MOLECULAR ECOLOGY, 22(10), 2603-2604. doi:10.1111/mec.12253
A transcriptomic investigation of handicap models in sexual selection
Wenzel, M. A., Webster, L. M. I., Paterson, S., Mougeot, F., Martinez-Padilla, J., & Piertney, S. B. (2013). A transcriptomic investigation of handicap models in sexual selection. BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY, 67(2), 221-234. doi:10.1007/s00265-012-1442-0
Detecting genes for variation in parasite burden and immunological traits in a wild population: testing the candidate gene approach
Brown, E. A., Pilkington, J. G., Nussey, D. H., Watt, K. A., Hayward, A. D., Tucker, R., . . . Slate, J. (2013). Detecting genes for variation in parasite burden and immunological traits in a wild population: testing the candidate gene approach. MOLECULAR ECOLOGY, 22(3), 757-773. doi:10.1111/j.1365-294X.2012.05757.x
HOW TO MEASURE MATURATION: A COMPARISON OF PROBABILISTIC METHODS USED TO TEST FOR GENOTYPIC VARIATION AND PLASTICITY IN THE DECISION TO MATURE
Harney, E., Van Dooren, T. J. M., Paterson, S., & Plaistow, S. J. (2013). HOW TO MEASURE MATURATION: A COMPARISON OF PROBABILISTIC METHODS USED TO TEST FOR GENOTYPIC VARIATION AND PLASTICITY IN THE DECISION TO MATURE. EVOLUTION, 67(2), 525-538. doi:10.1111/j.1558-5646.2012.01758.x
2012
Proteomics and <i>in Silico</i> Approaches To Extend Understanding of the Glutathione Transferase Superfamily of the Tropical Liver Fluke <i>Fasciola gigantica</i>
Morphew, R. M., Eccleston, N., Wilkinson, T. J., McGarry, J., Perally, S., Prescott, M., . . . LaCourse, E. J. (2012). Proteomics and <i>in Silico</i> Approaches To Extend Understanding of the Glutathione Transferase Superfamily of the Tropical Liver Fluke <i>Fasciola gigantica</i>. JOURNAL OF PROTEOME RESEARCH, 11(12), 5876-5889. doi:10.1021/pr300654w
Proteomics and <i>in Silico</i> Approaches To Extend Understanding of the Glutathione Transferase Superfamily of the Tropical Liver Fluke <i>Fasciola gigantica</i>
Morphew, R. M., Eccleston, N., Wilkinson, T. J., McGarry, J., Perally, S., Prescott, M., . . . LaCourse, E. J. (2012). Proteomics and <i>in Silico</i> Approaches To Extend Understanding of the Glutathione Transferase Superfamily of the Tropical Liver Fluke <i>Fasciola gigantica</i>. Journal of Proteome Research, 11(12), 5876-5889. doi:10.1021/pr300654w
Genomic diversity of the human intestinal parasite <i>Entamoeba histolytica</i>
Weedall, G. D., Clark, C. G., Koldkjaer, P., Kay, S., Bruchhaus, I., Tannich, E., . . . Hall, N. (2012). Genomic diversity of the human intestinal parasite <i>Entamoeba histolytica</i>. GENOME BIOLOGY, 13(5). doi:10.1186/gb-2012-13-5-r38
Evidence for selection at cytokine loci in a natural population of field voles (<i>Microtus agrestis</i>)
TURNER, A. K., BEGON, M., JACKSON, J. A., & PATERSON, S. (2012). Evidence for selection at cytokine loci in a natural population of field voles (<i>Microtus agrestis</i>). Molecular Ecology, 21(7), 1632-1646. doi:10.1111/j.1365-294x.2012.05501.x
Evidence for selection at cytokine loci in a natural population of field voles (Microtus agrestis)
Turner, A. K., Begon, M., Jackson, J. A., & Paterson, S. (2012). Evidence for selection at cytokine loci in a natural population of field voles (Microtus agrestis). MOLECULAR ECOLOGY, 21(7), 1632-1646. doi:10.1111/j.1365-294X.2012.05501.x
2011
<i>Pseudomonas aeruginosa</i> Population Diversity and Turnover in Cystic Fibrosis Chronic Infections
Mowat, E., Paterson, S., Fothergill, J. L., Wright, E. A., Ledson, M. J., Walshaw, M. J., . . . Winstanley, C. (2011). <i>Pseudomonas aeruginosa</i> Population Diversity and Turnover in Cystic Fibrosis Chronic Infections. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 183(12), 1674-1679. doi:10.1164/rccm.201009-1430OC
Evidence of Gene Conversion in Genes Encoding the Gal/GalNac Lectin Complex of <i>Entamoeba</i>
Weedall, G. D., Sherrington, J., Paterson, S., & Hall, N. (2011). Evidence of Gene Conversion in Genes Encoding the Gal/GalNac Lectin Complex of <i>Entamoeba</i>. PLOS NEGLECTED TROPICAL DISEASES, 5(6). doi:10.1371/journal.pntd.0001209
Frontiers in host-parasite ecology and evolution
Paterson, S., & Piertney, S. B. (2011). Frontiers in host-parasite ecology and evolution. MOLECULAR ECOLOGY, 20(5), 869-871. doi:10.1111/j.1365-294X.2010.04991.x
How do insects react to novel inherited symbionts? A microarray analysis of <i>Drosophila melanogaster</i> response to the presence of natural and introduced <i>Spiroplasma</i>
Hutchence, K. J., Fischer, B., Paterson, S., & Hurst, G. D. D. (2011). How do insects react to novel inherited symbionts? A microarray analysis of <i>Drosophila melanogaster</i> response to the presence of natural and introduced <i>Spiroplasma</i>. MOLECULAR ECOLOGY, 20(5), 950-958. doi:10.1111/j.1365-294X.2010.04974.x
Identification of genes responding to nematode infection in red grouse
Webster, L. M. I., Mello, L. V., Mougeot, F., Martinez-Padilla, J., Paterson, S., & Piertney, S. B. (2011). Identification of genes responding to nematode infection in red grouse. MOLECULAR ECOLOGY RESOURCES, 11(2), 305-313. doi:10.1111/j.1755-0998.2010.02912.x
The analysis of immunological profiles in wild animals: a case study on immunodynamics in the field vole, <i>Microtus agrestis</i>
Jackson, J. A., Begon, M., Birtles, R., Paterson, S., Friberg, I. M., Hall, A., . . . Bradley, J. E. (2011). The analysis of immunological profiles in wild animals: a case study on immunodynamics in the field vole, <i>Microtus agrestis</i>. MOLECULAR ECOLOGY, 20(5), 893-909. doi:10.1111/j.1365-294X.2010.04907.x
Transcriptomic response of red grouse to gastro-intestinal nematode parasites and testosterone: implications for population dynamics
Webster, L. M. I., Paterson, S., Mougeot, F., Martinez-Padilla, J., & Piertney, S. B. (2011). Transcriptomic response of red grouse to gastro-intestinal nematode parasites and testosterone: implications for population dynamics. MOLECULAR ECOLOGY, 20(5), 920-931. doi:10.1111/j.1365-294X.2010.04906.x
Microbe Interactions Undermine Predictions Response
Telfer, S., Lambin, X., Birtles, R., Beldomenico, P., Burthe, S., Paterson, S., & Begon, M. (2011). Microbe Interactions Undermine Predictions Response. SCIENCE, 331(6014). Retrieved from https://www.webofscience.com/
Microbe Interactions Undermine Predictions—Response
Telfer, S., Lambin, X., Birtles, R., Beldomenico, P., Burthe, S., Paterson, S., & Begon, M. (2011). Microbe Interactions Undermine Predictions—Response. Science, 331(6014), 145-147. doi:10.1126/science.331.6014.145-a
Response
Telfer, S., Lambin, X., Birtles, R., Beldomenico, P., Burthe, S., Paterson, S., & Begon, M. (2011). Response. Science, 331(6014), 145-146. doi:10.1126/science.331.6014.145-a
Genetic Diversity in Cytokines Associated with Immune Variation and Resistance to Multiple Pathogens in a Natural Rodent Population
Turner, A. K., Begon, M., Jackson, J. A., Bradley, J. E., & Paterson, S. (2011). Genetic Diversity in Cytokines Associated with Immune Variation and Resistance to Multiple Pathogens in a Natural Rodent Population. PLOS GENETICS, 7(10). doi:10.1371/journal.pgen.1002343
Wild immunology: converging on the real world
Babayan, S. A., Allen, J. E., Bradley, J. E., Geuking, M. B., Graham, A. L., Grencis, R. K., . . . Pedersen, A. B. (2011). Wild immunology: converging on the real world. ANNALS MEETING REPORTS, 1236, 17-29. doi:10.1111/j.1749-6632.2011.06251.x
2010
Effects of Snail Density on Growth, Reproduction and Survival of Biomphalaria alexandrina Exposed to Schistosoma mansoni.
Mangal, T. D., Paterson, S., & Fenton, A. (2010). Effects of Snail Density on Growth, Reproduction and Survival of Biomphalaria alexandrina Exposed to Schistosoma mansoni.. Journal of parasitology research, 2010, 186792. doi:10.1155/2010/186792
Response of the <i>Strongyloides ratti</i> transcriptome to host immunological environment
O'Meara, H., Barber, R., Mello, L. V., Sangaralingam, A., Viney, M. E., & Paterson, S. (2010). Response of the <i>Strongyloides ratti</i> transcriptome to host immunological environment. INTERNATIONAL JOURNAL FOR PARASITOLOGY, 40(14), 1609-1617. doi:10.1016/j.ijpara.2010.06.005
Species Interactions in a Parasite Community Drive Infection Risk in a Wildlife Population
Telfer, S., Lambin, X., Birtles, R., Beldomenico, P., Burthe, S., Paterson, S., & Begon, M. (2010). Species Interactions in a Parasite Community Drive Infection Risk in a Wildlife Population. SCIENCE, 330(6001), 243-246. doi:10.1126/science.1190333
Antagonistic coevolution accelerates molecular evolution
Paterson, S., Vogwill, T., Buckling, A., Benmayor, R., Spiers, A. J., Thomson, N. R., . . . Brockhurst, M. A. (2010). Antagonistic coevolution accelerates molecular evolution. NATURE, 464(7286), 275-U154. doi:10.1038/nature08798
2009
Identification of novel aspartic proteases from <i>Strongyloides ratti</i> and characterisation of their evolutionary relationships, stage-specific expression and molecular structure
Mello, L. V., O'Meara, H., Rigden, D. J., & Paterson, S. (2009). Identification of novel aspartic proteases from <i>Strongyloides ratti</i> and characterisation of their evolutionary relationships, stage-specific expression and molecular structure. BMC GENOMICS, 10. doi:10.1186/1471-2164-10-611
How effective is recognition of siblings on the basis of genotype?
Paterson, S., & Hurst, J. L. (2009). How effective is recognition of siblings on the basis of genotype?. JOURNAL OF EVOLUTIONARY BIOLOGY, 22(9), 1875-1881. doi:10.1111/j.1420-9101.2009.01796.x
Seasonal host dynamics drive the timing of recurrent epidemics in a wildlife population
Begon, M., Telfer, S., Smith, M. J., Burthe, S., Paterson, S., & Lambin, X. (2009). Seasonal host dynamics drive the timing of recurrent epidemics in a wildlife population. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 276(1662), 1603-1610. doi:10.1098/rspb.2008.1732
The effect of infection history on the fitness of the gastrointestinal nematode <i>Strongyloides ratti</i>
Bleay, C., Wilkes, C. P., Paterson, S., & Viney, M. E. (2009). The effect of infection history on the fitness of the gastrointestinal nematode <i>Strongyloides ratti</i>. PARASITOLOGY, 136(5), 567-577. doi:10.1017/S0031182009005617
Effects of abundance on infection in natural populations: Field voles and cowpox virus
Begon, M., Telfer, S., Burthe, S., Lambin, X., Smith, M. J., & Paterson, S. (2009). Effects of abundance on infection in natural populations: Field voles and cowpox virus. EPIDEMICS, 1(1), 35-46. doi:10.1016/j.epidem.2008.10.001
2008
Zoologists learning to love molecules An introduction to molecular ecology 2nd edition. (2008). by Trevor Beebee and Graham Rowe Oxford University Press. Oxford: 384 pp. ISBN 978‐0‐19‐929205‐9
Paterson, S. (2008). Zoologists learning to love molecules An introduction to molecular ecology 2nd edition. (2008). by Trevor Beebee and Graham Rowe Oxford University Press. Oxford: 384 pp. ISBN 978‐0‐19‐929205‐9. BioEssays, 30(10), 1030-1031. doi:10.1002/bies.20818
Microarray analysis of gender- and parasite-specific gene transcription in <i>Strongyloides ratti</i>
Evans, H., Mello, L. V., Fang, Y., Wit, E., Thompson, F. J., Viney, M. E., & Paterson, S. (2008). Microarray analysis of gender- and parasite-specific gene transcription in <i>Strongyloides ratti</i>. INTERNATIONAL JOURNAL FOR PARASITOLOGY, 38(11), 1329-1341. doi:10.1016/j.ijpara.2008.02.004
Immunological Responses Elicited by Different Infection Regimes with <i>Strongyloides ratti</i>
Paterson, S., Wilkes, C., Bleay, C., & Viney, M. E. (2008). Immunological Responses Elicited by Different Infection Regimes with <i>Strongyloides ratti</i>. PLOS ONE, 3(6). doi:10.1371/journal.pone.0002509
Parasite interactions in natural populations: insights from longitudinal data
Telfer, S., Birtles, R., Bennett, M., Lambin, X., Paterson, S., & Begon, M. (2008). Parasite interactions in natural populations: insights from longitudinal data. PARASITOLOGY, 135(7), 767-781. doi:10.1017/S0031182008000395
Predicting the Impact of Long-Term Temperature Changes on the Epidemiology and Control of Schistosomiasis: A Mechanistic Model
Mangal, T. D., Paterson, S., & Fenton, A. (2008). Predicting the Impact of Long-Term Temperature Changes on the Epidemiology and Control of Schistosomiasis: A Mechanistic Model. PLOS ONE, 3(1). doi:10.1371/journal.pone.0001438
Discovery of genes for roundworm disease
Paterson, S. (2008). Discovery of genes for roundworm disease. Natural Environment Research Council Annual Review 2007-2008, 14-15.
Predicting the impact of global warming on the epidemiology and control of schistosomiasis: a mechanistic model
Mangal, T. D., Paterson, S., & Fenton, A. (2008). Predicting the impact of global warming on the epidemiology and control of schistosomiasis: a mechanistic model. PlosONE, 3(1), e1438.
2007
The genetic basis of inbreeding avoidance in house mice
Sherborne, A. L., Thom, M. D., Paterson, S., Jury, F., Ollier, W. E. R., Stockley, P., . . . Hurst, J. L. (2007). The genetic basis of inbreeding avoidance in house mice. CURRENT BIOLOGY, 17(23), 2061-2066. doi:10.1016/j.cub.2007.10.041
Density-dependent immune responses against the gastrointestinal nematode <i>Strongyloides ratti</i>
Bleay, C., Wilkes, C. P., Paterson, S., & Viney, M. E. (2007). Density-dependent immune responses against the gastrointestinal nematode <i>Strongyloides ratti</i>. INTERNATIONAL JOURNAL FOR PARASITOLOGY, 37(13), 1501-1509. doi:10.1016/j.ijpara.2007.04.023
The immune response during a <i>Strongyloides ratti</i> infection of rats
Wilkes, C. P., Bleay, C., Paterson, S., & Viney, M. E. (2007). The immune response during a <i>Strongyloides ratti</i> infection of rats. PARASITE IMMUNOLOGY, 29(7), 339-346. doi:10.1111/j.1365-3024.2007.00945.x
Experimental evolution of parasite life-history traits in <i>Strongyloides ratti</i> (Nematoda)
Paterson, S., & Barber, R. (2007). Experimental evolution of parasite life-history traits in <i>Strongyloides ratti</i> (Nematoda). PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 274(1617), 1467-1474. doi:10.1098/rspb.2006.0433
Host availability and the evolution of parasite life-history strategies
Crossan, J., Paterson, S., & Fenton, A. (2007). Host availability and the evolution of parasite life-history strategies. EVOLUTION, 61(3), 675-684. doi:10.1111/j.1558-5646.2007.00057.x
2005
No evidence for specificity between host and parasite genotypes in experimental <i>Strongyloides ratti</i> (Nematoda) infections
Paterson, S. (2005). No evidence for specificity between host and parasite genotypes in experimental <i>Strongyloides ratti</i> (Nematoda) infections. INTERNATIONAL JOURNAL FOR PARASITOLOGY, 35(14), 1539-1545. doi:10.1016/j.ijpara.2005.08.007
The effect of host heterogeneity and parasite intragenomic interactions on parasite population structure.
Hamilton, R., Boots, M., & Paterson, S. (2005). The effect of host heterogeneity and parasite intragenomic interactions on parasite population structure.. Proceedings. Biological sciences, 272(1573), 1647-1653. doi:10.1098/rspb.2005.3134
The effect of host heterogeneity and parasite intragenornic interactions on parasite population structure
Hamilton, R., Boots, M., & Paterson, S. (2005). The effect of host heterogeneity and parasite intragenornic interactions on parasite population structure. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 272(1573), 1647-1653. doi:10.1098/rspb.2005.3134
2004
Characterization and PCR multiplexing of novel highly variable tetranucleotide Atlantic salmon (<i>Salmo salar</i> L.) microsatellites
Paterson, S., Piertney, S. B., Knox, D., Gilbey, J., & Verspoor, E. (2004). Characterization and PCR multiplexing of novel highly variable tetranucleotide Atlantic salmon (<i>Salmo salar</i> L.) microsatellites. MOLECULAR ECOLOGY NOTES, 4(2), 160-162. doi:10.1111/j.1471-8286.2004.00598.x
The effect of the host immune response on the parasitic nematode <i>Strongyloides ratti</i>
Wilkes, C. P., Thompson, F. J., Gardner, M. P., Paterson, S., & Viney, M. E. (2004). The effect of the host immune response on the parasitic nematode <i>Strongyloides ratti</i>. PARASITOLOGY, 128, 661-669. doi:10.1017/S0031182004005062
DETERMINING THE OPTIMAL DEVELOPMENTAL ROUTE OF STRONGYLOIDES RATTI: AN EVOLUTIONARILY STABLE STRATEGY APPROACH
Fenton, A., Paterson, S., Viney, M. E., & Gardner, M. P. (2004). DETERMINING THE OPTIMAL DEVELOPMENTAL ROUTE OF STRONGYLOIDES RATTI: AN EVOLUTIONARILY STABLE STRATEGY APPROACH. Evolution, 58(5), 989. doi:10.1554/03-550
Determining the optimal developmental route of <i>Strongyloides ratti</i>:: An evolutionarily stable strategy approach
Fenton, A., Paterson, S., Viney, M. E., & Gardner, M. P. (2004). Determining the optimal developmental route of <i>Strongyloides ratti</i>:: An evolutionarily stable strategy approach. EVOLUTION, 58(5), 989-1000. Retrieved from https://www.webofscience.com/
2003
Molecular genetic variation and selection on genotype
Pemberton, J. M., Coltman, D. W., Bancroft, D. R., Smith, J. A., & Paterson, S. (2003). Molecular genetic variation and selection on genotype. In Soay Sheep (pp. 217-242). Cambridge University Press. doi:10.1017/cbo9780511550669.008
Mixed models: getting the best use of parasitological data
Paterson, S., & Lello, J. (2003). Mixed models: getting the best use of parasitological data. TRENDS IN PARASITOLOGY, 19(8), 370-375. doi:10.1016/S1471-4922(03)00149-1
Functional consequences of genetic diversity in <i>Strongyloides ratti</i> infections
Paterson, S., & Viney, M. E. (2003). Functional consequences of genetic diversity in <i>Strongyloides ratti</i> infections. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 270(1519), 1023-1032. doi:10.1098/rspb.2003.2346
2002
Host immune responses are necessary for density dependence in nematode infections
Paterson, S., & Viney, M. E. (2002). Host immune responses are necessary for density dependence in nematode infections. PARASITOLOGY, 125, 283-292. doi:10.1017/S0031182002002056
2001
Use of repeated measure linear modeling to analyze longitudinal data from experimental parasite infections
Paterson, S. (2001). Use of repeated measure linear modeling to analyze longitudinal data from experimental parasite infections. JOURNAL OF PARASITOLOGY, 87(5), 969-971. Retrieved from https://www.webofscience.com/
2000
The interface between epidemiology and population genetics
Paterson, S., & Viney, M. E. (2000). The interface between epidemiology and population genetics. PARASITOLOGY TODAY, 16(12), 528-532. doi:10.1016/S0169-4758(00)01776-2
Inferring infection processes of a parasitic nematode using population genetics
Paterson, S., Fisher, M. C., & Viney, M. E. (2000). Inferring infection processes of a parasitic nematode using population genetics. PARASITOLOGY, 120, 185-194. doi:10.1017/S0031182099005417
1999
Heterogeneity in the distribution of <i>Strongyloides ratti</i> infective stages among the faecal pellets of rats
Harvey, S. C., Paterson, S., & Viney, M. E. (1999). Heterogeneity in the distribution of <i>Strongyloides ratti</i> infective stages among the faecal pellets of rats. PARASITOLOGY, 119, 227-235. doi:10.1017/S0031182099004588
The distribution of Strongyloides ratti infective stages among the faecal pellets of rats
Harvey, S. C., Paterson, S., & Viney, M. E. (1999). The distribution of Strongyloides ratti infective stages among the faecal pellets of rats. Parasitology, 119, 227-235.
1998
Evidence for balancing selection at the major histocompatibility complex in a free-living ruminant
Paterson, S. (1998). Evidence for balancing selection at the major histocompatibility complex in a free-living ruminant. JOURNAL OF HEREDITY, 89(4), 289-294. doi:10.1093/jhered/89.4.289
Major histocompatibility complex variation associated with juvenile survival and parasite resistance in a large unmanaged ungulate population (<i>Ovis aries</i> L.)
Paterson, S., Wilson, K., & Pemberton, J. M. (1998). Major histocompatibility complex variation associated with juvenile survival and parasite resistance in a large unmanaged ungulate population (<i>Ovis aries</i> L.). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 95(7), 3714-3719. doi:10.1073/pnas.95.7.3714
1997
No evidence for major histocompatibility complex-dependent mating patterns in a free-living ruminant population
Paterson, S., & Pemberton, J. M. (1997). No evidence for major histocompatibility complex-dependent mating patterns in a free-living ruminant population. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 264(1389), 1813-1819. doi:10.1098/rspb.1997.0250
1996
The maintenance of genetic polymorphism in small island populations: Large mammals in the Hebrides
Pemberton, J. M., Smith, J. A., Coulson, T. N., Marshall, T. C., Slate, J., Paterson, S., . . . CluttonBrock, T. H. (1996). The maintenance of genetic polymorphism in small island populations: Large mammals in the Hebrides. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 351(1341), 745-752. doi:10.1098/rstb.1996.0069