Publications
2013
Parallel Recruitment of Multiple Genes into C<sub>4</sub> Photosynthesis
Christin, P. -A., Boxall, S. F., Gregory, R., Edwards, E. J., Hartwell, J., & Osborne, C. P. (2013). Parallel Recruitment of Multiple Genes into C<sub>4</sub> Photosynthesis. GENOME BIOLOGY AND EVOLUTION, 5(11), 2174-2187. doi:10.1093/gbe/evt168
2012
Adaptive Evolution of C<sub>4</sub> Photosynthesis through Recurrent Lateral Gene Transfer
Christin, P. -A., Edwards, E. J., Besnard, G., Boxall, S. F., Gregory, R., Kellogg, E. A., . . . Osborne, C. P. (2012). Adaptive Evolution of C<sub>4</sub> Photosynthesis through Recurrent Lateral Gene Transfer. CURRENT BIOLOGY, 22(5), 445-449. doi:10.1016/j.cub.2012.01.054
2011
A <i>De Novo</i> Expression Profiling of <i>Anopheles funestus</i>, Malaria Vector in Africa, Using 454 Pyrosequencing
Gregory, R., Darby, A. C., Irving, H., Coulibaly, M. B., Hughes, M., Koekemoer, L. L., . . . Wondji, C. S. (2011). A <i>De Novo</i> Expression Profiling of <i>Anopheles funestus</i>, Malaria Vector in Africa, Using 454 Pyrosequencing. PLOS ONE, 6(2). doi:10.1371/journal.pone.0017418
2010
Rule-based simulation of temperate bacteriophage infection: restriction-modification as a limiter to infection in bacterial populations.
Gregory, R., Saunders, V. A., & Saunders, J. R. (2010). Rule-based simulation of temperate bacteriophage infection: restriction-modification as a limiter to infection in bacterial populations.. Bio Systems, 100(3), 166-177. doi:10.1016/j.biosystems.2010.02.010
2008
Individual-based modelling of genetic elements and evolution in bacteria.
Saunders, V. A., Gregory, R., & Saunders, J. R. (2008). Individual-based modelling of genetic elements and evolution in bacteria.. In M. Khosrow-Pour (Ed.), Encyclopedia of Information Science and Technology, (pp. 716-724). Hershey, Pennsylvania: IGI Global.
Rule-based computing system for microbial interactions and communications: evolution in virtual bacterial populations.
Gregory, R., Saunders, V. A., & Saunders, J. R. (2008). Rule-based computing system for microbial interactions and communications: evolution in virtual bacterial populations.. Bio Systems, 91(1), 216-230. doi:10.1016/j.biosystems.2007.09.002
Rule-based modelling of conjugative plasmid transfer and incompatibility.
Gregory, R., Saunders, J. R., & Saunders, V. A. (2008). Rule-based modelling of conjugative plasmid transfer and incompatibility.. Bio Systems, 91(1), 201-215. doi:10.1016/j.biosystems.2007.09.003
2006
The Paton individual-based model legacy.
Gregory, R., Saunders, J. R., & Saunders, V. A. (2006). The Paton individual-based model legacy.. Bio Systems, 85(1), 46-54. doi:10.1016/j.biosystems.2006.02.009
2005
Computing Bacterial Evolvability using Individual-based Models
Paton, R. C., Gregory, R., Vlachos, C., Palmer, J. W., Saunders, J. R., & Wu, Q. H. (2005). Computing Bacterial Evolvability using Individual-based Models. In M. Gheorghe (Ed.), Molecular computation models : unconventional approaches (pp. 51-61). Hershey PA: Idea Group Publishers.
2004
Evolvable social agents for bacterial systems modeling.
Paton, R., Gregory, R., Vlachos, C., Saunders, J., & Wu, H. (2004). Evolvable social agents for bacterial systems modeling.. IEEE transactions on nanobioscience, 3(3), 208-216. doi:10.1109/tnb.2004.833701
Parallelising a model of bacterial interaction and evolution.
Gregory, R., Paton, R., Saunders, J., & Wu, Q. H. (2004). Parallelising a model of bacterial interaction and evolution.. Bio Systems, 76(1-3), 121-131. doi:10.1016/j.biosystems.2004.05.021
A Model of Bacterial Adaptability Based on Multiple Scales of Interaction : COSMIC
Gregory, R., Paton, P. R., Saunders, J. R., & Wu, Q. H. (2004). A Model of Bacterial Adaptability Based on Multiple Scales of Interaction : COSMIC. In R. Paton, H. Bolouri, M. Holcombe, J. H. Parish, & R. Tateson (Eds.), Computation in Cells and Tissues (pp. 340). Berlin: Springer.