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2024

Emergence of the novel infectious bursal disease virus variant in vaccinated poultry flocks in Egypt.

Shahein, M. A., Sultan, H. A., Zanaty, A., Adel, A., Mosaad, Z., Said, D., . . . Samy, A. (2024). Emergence of the novel infectious bursal disease virus variant in vaccinated poultry flocks in Egypt.. Avian pathology : journal of the W.V.P.A, 53(5), 419-429. doi:10.1080/03079457.2024.2348513

DOI
10.1080/03079457.2024.2348513
Journal article

2023

Immunogenicity and Cross-Protective Efficacy Induced by an Inactivated Recombinant Avian Influenza A/H5N1 (Clade 2.3.4.4b) Vaccine against Co-Circulating Influenza A/H5Nx Viruses.

Mahmoud, S. H., Khalil, A. A., Abo Shama, N. M., El Sayed, M. F., Soliman, R. A., Hagag, N. M., . . . Mostafa, A. (2023). Immunogenicity and Cross-Protective Efficacy Induced by an Inactivated Recombinant Avian Influenza A/H5N1 (Clade 2.3.4.4b) Vaccine against Co-Circulating Influenza A/H5Nx Viruses.. Vaccines, 11(9), 1397. doi:10.3390/vaccines11091397

DOI
10.3390/vaccines11091397
Journal article

An oseltamivir-resistant avian H1N1 influenza A virus can transmit from mallards to chickens similarly to a wild-type strain: implications for the risk of resistance transmission to humans.

Skog, E., Nykvist, M., Naguib, M. M., Wille, M., Bröjer, C., Agarwal, V., . . . Järhult, J. D. (2023). An oseltamivir-resistant avian H1N1 influenza A virus can transmit from mallards to chickens similarly to a wild-type strain: implications for the risk of resistance transmission to humans.. The Journal of general virology, 104(4). doi:10.1099/jgv.0.001835

DOI
10.1099/jgv.0.001835
Journal article

2022

Comparison of genomic and antigenic properties of Newcastle Disease virus genotypes II, XXI and VII from Egypt do not point to antigenic drift as selection marker.

Naguib, M. M., Höper, D., Elkady, M. F., Afifi, M. A., Erfan, A., Abozeid, H. H., . . . Grund, C. (2022). Comparison of genomic and antigenic properties of Newcastle Disease virus genotypes II, XXI and VII from Egypt do not point to antigenic drift as selection marker.. Transboundary and emerging diseases, 69(2), 849-863. doi:10.1111/tbed.14121

DOI
10.1111/tbed.14121
Journal article

2021

Epidemiology, Genetic Characterization, and Pathogenesis of Avian Influenza H5N8 Viruses Circulating in Northern and Southern Parts of Egypt, 2017-2019.

Tarek, M., Naguib, M. M., Arafa, A. -S., Tantawy, L. A., Selim, K. M., Talaat, S., & Sultan, H. A. (2021). Epidemiology, Genetic Characterization, and Pathogenesis of Avian Influenza H5N8 Viruses Circulating in Northern and Southern Parts of Egypt, 2017-2019.. Animals : an open access journal from MDPI, 11(8), 2208. doi:10.3390/ani11082208

DOI
10.3390/ani11082208
Journal article

A high-quality Genome and Comparison of Short versus Long Read Transcriptome of the Palaearctic duck<i>Aythya fuligula</i>(Tufted Duck)

DOI
10.1101/2021.02.24.432697
Preprint

2020

Genomic and antigenic properties of Newcastle Disease virus genotypes 2.XX1 and 2.VII from Egypt do not point to antigenic drift as a driving force of spread

DOI
10.22541/au.160637962.28915681/v1
Preprint

Genesis and spread of multiple reassortants during the 2016/2017 H5 avian influenza epidemic in Eurasia.

Lycett, S. J., Pohlmann, A., Staubach, C., Caliendo, V., Woolhouse, M., Beer, M., . . . Global Consortium for H5N8 and Related Influenza Viruses. (2020). Genesis and spread of multiple reassortants during the 2016/2017 H5 avian influenza epidemic in Eurasia.. Proceedings of the National Academy of Sciences of the United States of America, 117(34), 20814-20825. doi:10.1073/pnas.2001813117

DOI
10.1073/pnas.2001813117
Journal article

Wild Birds in Live Birds Markets: Potential Reservoirs of Enzootic Avian Influenza Viruses and Antimicrobial Resistant <i>Enterobacteriaceae</i> in Northern Egypt.

Nabil, N. M., Erfan, A. M., Tawakol, M. M., Haggag, N. M., Naguib, M. M., & Samy, A. (2020). Wild Birds in Live Birds Markets: Potential Reservoirs of Enzootic Avian Influenza Viruses and Antimicrobial Resistant <i>Enterobacteriaceae</i> in Northern Egypt.. Pathogens (Basel, Switzerland), 9(3), E196. doi:10.3390/pathogens9030196

DOI
10.3390/pathogens9030196
Journal article

2019

Avian influenza virus surveillance in migratory birds in Egypt revealed a novel reassortant H6N2 subtype

Zanaty, A. M., Erfan, A. M., Mady, W. H., Amer, F., Nour, A. A., Rabie, N., . . . Naguib, M. M. (2019). Avian influenza virus surveillance in migratory birds in Egypt revealed a novel reassortant H6N2 subtype. Avian Research, 10(1). doi:10.1186/s40657-019-0180-7

DOI
10.1186/s40657-019-0180-7
Journal article

Chicken anaemia virus enhances and prolongs subsequent avian influenza (H9N2) and infectious bronchitis viral infections.

Erfan, A. M., Selim, A. A., Helmy, S. A., Eriksson, P., & Naguib, M. M. (2019). Chicken anaemia virus enhances and prolongs subsequent avian influenza (H9N2) and infectious bronchitis viral infections.. Veterinary microbiology, 230, 123-129. doi:10.1016/j.vetmic.2019.01.024

DOI
10.1016/j.vetmic.2019.01.024
Journal article

2018

Endemic situation of multiple avian influenza strains in poultry in Egypt: A continuing nightmare.

Naguib, M. M., & Harder, T. (2018). Endemic situation of multiple avian influenza strains in poultry in Egypt: A continuing nightmare.. Zoonoses and public health, 65(8), 908-910. doi:10.1111/zph.12486

DOI
10.1111/zph.12486
Journal article

Characterization of full genome sequences of chicken anemia viruses circulating in Egypt reveals distinct genetic diversity and evidence of recombination.

Erfan, A. M., Selim, A. A., & Naguib, M. M. (2018). Characterization of full genome sequences of chicken anemia viruses circulating in Egypt reveals distinct genetic diversity and evidence of recombination.. Virus research, 251, 78-85. doi:10.1016/j.virusres.2018.05.008

DOI
10.1016/j.virusres.2018.05.008
Journal article

Multiple introductions of reassorted highly pathogenic avian influenza viruses (H5N8) clade 2.3.4.4b causing outbreaks in wild birds and poultry in Egypt.

Yehia, N., Naguib, M. M., Li, R., Hagag, N., El-Husseiny, M., Mosaad, Z., . . . Arafa, A. -S. A. (2018). Multiple introductions of reassorted highly pathogenic avian influenza viruses (H5N8) clade 2.3.4.4b causing outbreaks in wild birds and poultry in Egypt.. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 58, 56-65. doi:10.1016/j.meegid.2017.12.011

DOI
10.1016/j.meegid.2017.12.011
Journal article

2017

Natural Reassortants of Potentially Zoonotic Avian Influenza Viruses H5N1 and H9N2 from Egypt Display Distinct Pathogenic Phenotypes in Experimentally Infected Chickens and Ferrets.

Naguib, M. M., Ulrich, R., Kasbohm, E., Eng, C. L. P., Hoffmann, D., Grund, C., . . . Harder, T. C. (2017). Natural Reassortants of Potentially Zoonotic Avian Influenza Viruses H5N1 and H9N2 from Egypt Display Distinct Pathogenic Phenotypes in Experimentally Infected Chickens and Ferrets.. Journal of virology, 91(23), e01300-e01317. doi:10.1128/jvi.01300-17

DOI
10.1128/jvi.01300-17
Journal article

Insights into genetic diversity and biological propensities of potentially zoonotic avian influenza H9N2 viruses circulating in Egypt.

Naguib, M. M., Arafa, A. -S., Parvin, R., Beer, M., Vahlenkamp, T., & Harder, T. C. (2017). Insights into genetic diversity and biological propensities of potentially zoonotic avian influenza H9N2 viruses circulating in Egypt.. Virology, 511, 165-174. doi:10.1016/j.virol.2017.08.028

DOI
10.1016/j.virol.2017.08.028
Journal article

New real time and conventional RT-PCRs for updated molecular diagnosis of infectious bronchitis virus infection (IBV) in chickens in Egypt associated with frequent co-infections with avian influenza and Newcastle Disease viruses.

Naguib, M. M., El-Kady, M. F., Lüschow, D., Hassan, K. E., Arafa, A. -S., El-Zanaty, A., . . . Harder, T. C. (2017). New real time and conventional RT-PCRs for updated molecular diagnosis of infectious bronchitis virus infection (IBV) in chickens in Egypt associated with frequent co-infections with avian influenza and Newcastle Disease viruses.. Journal of virological methods, 245, 19-27. doi:10.1016/j.jviromet.2017.02.018

DOI
10.1016/j.jviromet.2017.02.018
Journal article

Heterologous post-infection immunity against Egyptian avian influenza virus (AIV) H9N2 modulates the course of subsequent infection by highly pathogenic AIV H5N1, but vaccination immunity does not.

Naguib, M. M., Grund, C., Arafa, A. -S., Abdelwhab, E. M., Beer, M., & Harder, T. C. (2017). Heterologous post-infection immunity against Egyptian avian influenza virus (AIV) H9N2 modulates the course of subsequent infection by highly pathogenic AIV H5N1, but vaccination immunity does not.. The Journal of general virology, 98(6), 1169-1173. doi:10.1099/jgv.0.000767

DOI
10.1099/jgv.0.000767
Journal article

Novel real-time PCR-based patho- and phylotyping of potentially zoonotic avian influenza A subtype H5 viruses at risk of incursion into Europe in 2017.

Naguib, M. M., Graaf, A., Fortin, A., Luttermann, C., Wernery, U., Amarin, N., . . . Harder, T. C. (2017). Novel real-time PCR-based patho- and phylotyping of potentially zoonotic avian influenza A subtype H5 viruses at risk of incursion into Europe in 2017.. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 22(1), 30435. doi:10.2807/1560-7917.es.2017.22.1.30435

DOI
10.2807/1560-7917.es.2017.22.1.30435
Journal article

2016

Full genome sequence analysis of a newly emerged QX-like infectious bronchitis virus from Sudan reveals distinct spots of recombination.

Naguib, M. M., Höper, D., Arafa, A. -S., Setta, A. M., Abed, M., Monne, I., . . . Harder, T. C. (2016). Full genome sequence analysis of a newly emerged QX-like infectious bronchitis virus from Sudan reveals distinct spots of recombination.. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 46, 42-49. doi:10.1016/j.meegid.2016.10.017

DOI
10.1016/j.meegid.2016.10.017
Journal article

The matrix gene of influenza A H5N1 in Egypt, 2006-2016: molecular insights and distribution of amantadine-resistant variants.

Naguib, M. M., Hagag, N., El-Sanousi, A. A., Hussein, H. A., & Arafa, A. -S. (2016). The matrix gene of influenza A H5N1 in Egypt, 2006-2016: molecular insights and distribution of amantadine-resistant variants.. Virus genes, 52(6), 872-876. doi:10.1007/s11262-016-1373-3

DOI
10.1007/s11262-016-1373-3
Journal article

The sequence of the full spike S1 glycoprotein of infectious bronchitis virus circulating in Egypt reveals evidence of intra-genotypic recombination.

Zanaty, A., Naguib, M. M., El-Husseiny, M. H., Mady, W., Hagag, N., & Arafa, A. -S. (2016). The sequence of the full spike S1 glycoprotein of infectious bronchitis virus circulating in Egypt reveals evidence of intra-genotypic recombination.. Archives of virology, 161(12), 3583-3587. doi:10.1007/s00705-016-3042-1

DOI
10.1007/s00705-016-3042-1
Journal article

Evolutionary features of influenza A/H5N1 virus populations in Egypt: poultry and human health implications.

Naguib, M. M., Abdelwhab, E. M., & Harder, T. C. (2016). Evolutionary features of influenza A/H5N1 virus populations in Egypt: poultry and human health implications.. Archives of virology, 161(7), 1963-1967. doi:10.1007/s00705-016-2849-0

DOI
10.1007/s00705-016-2849-0
Journal article

Introduction and enzootic of A/H5N1 in Egypt: Virus evolution, pathogenicity and vaccine efficacy ten years on.

Abdelwhab, E. M., Hassan, M. K., Abdel-Moneim, A. S., Naguib, M. M., Mostafa, A., Hussein, I. T. M., . . . Hafez, H. M. (2016). Introduction and enzootic of A/H5N1 in Egypt: Virus evolution, pathogenicity and vaccine efficacy ten years on.. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 40, 80-90. doi:10.1016/j.meegid.2016.02.023

DOI
10.1016/j.meegid.2016.02.023
Journal article

Different counteracting host immune responses to clade 2.2.1.1 and 2.2.1.2 Egyptian H5N1 highly pathogenic avian influenza viruses in naïve and vaccinated chickens.

Samy, A. A., El-Enbaawy, M. I., El-Sanousi, A. A., Nasef, S. A., Naguib, M. M., Abdelwhab, E. M., . . . Saito, T. (2016). Different counteracting host immune responses to clade 2.2.1.1 and 2.2.1.2 Egyptian H5N1 highly pathogenic avian influenza viruses in naïve and vaccinated chickens.. Veterinary microbiology, 183, 103-109. doi:10.1016/j.vetmic.2015.12.005

DOI
10.1016/j.vetmic.2015.12.005
Journal article

2015

Outbreaks of highly pathogenic avian influenza H5N1 clade 2.3.2.1c in hunting falcons and kept wild birds in Dubai implicate intercontinental virus spread.

Naguib, M. M., Kinne, J., Chen, H., Chan, K. -H., Joseph, S., Wong, P. -C., . . . Harder, T. C. (2015). Outbreaks of highly pathogenic avian influenza H5N1 clade 2.3.2.1c in hunting falcons and kept wild birds in Dubai implicate intercontinental virus spread.. The Journal of general virology, 96(11), 3212-3222. doi:10.1099/jgv.0.000274

DOI
10.1099/jgv.0.000274
Journal article

Evolutionary trajectories and diagnostic challenges of potentially zoonotic avian influenza viruses H5N1 and H9N2 co-circulating in Egypt.

Naguib, M. M., Arafa, A. -S. A., El-Kady, M. F., Selim, A. A., Gunalan, V., Maurer-Stroh, S., . . . Harder, T. C. (2015). Evolutionary trajectories and diagnostic challenges of potentially zoonotic avian influenza viruses H5N1 and H9N2 co-circulating in Egypt.. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 34, 278-291. doi:10.1016/j.meegid.2015.06.004

DOI
10.1016/j.meegid.2015.06.004
Journal article

Emergence of a novel cluster of influenza A(H5N1) virus clade 2.2.1.2 with putative human health impact in Egypt, 2014/15.

Arafa, A. S., Naguib, M. M., Luttermann, C., Selim, A. A., Kilany, W. H., Hagag, N., . . . Harder, T. C. (2015). Emergence of a novel cluster of influenza A(H5N1) virus clade 2.2.1.2 with putative human health impact in Egypt, 2014/15.. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 20(13), 2-8. doi:10.2807/1560-7917.es2015.20.13.21085

DOI
10.2807/1560-7917.es2015.20.13.21085
Journal article

2012

Effect of cocirculation of highly pathogenic avian influenza H5N1 subtype with low pathogenic H9N2 subtype on the spread of infections.

Arafa, A. -S., Hagag, N. M., Yehia, N., Zanaty, A. M., Naguib, M. M., & Nasef, S. A. (2012). Effect of cocirculation of highly pathogenic avian influenza H5N1 subtype with low pathogenic H9N2 subtype on the spread of infections.. In Avian diseases Vol. 56 (pp. 849-857). doi:10.1637/10152-040812-reg.1

DOI
10.1637/10152-040812-reg.1
Conference Paper