Publications
2024
The Interfascicular Matrix of Energy Storing Tendons Houses Heterogenous Cell Populations Disproportionately Affected by Aging
Zamboulis, D. E., Marr, N., Lenzi, L., Birch, H. L., Screen, H. R. C., Clegg, P. D., & Thorpe, C. T. (2024). The Interfascicular Matrix of Energy Storing Tendons Houses Heterogenous Cell Populations Disproportionately Affected by Aging. AGING AND DISEASE. doi:10.14336/AD.2023.0425-1
CRISPR-Cas in Pseudomonas aeruginosa provides transient population-level immunity against high phage exposures.
Watson, B. N. J., Capria, L., Alseth, E. O., Pons, B. J., Biswas, A., Lenzi, L., . . . Meaden, S. (2024). CRISPR-Cas in Pseudomonas aeruginosa provides transient population-level immunity against high phage exposures.. The ISME journal, 18(1), wrad039. doi:10.1093/ismejo/wrad039
2023
The bovine foot skin microbiota is associated with host genotype and the development of infectious digital dermatitis lesions
Bay, V., Gillespie, A., Ganda, E., Evans, N. J., Carter, S. D., Lenzi, L., . . . Oikonomou, G. (n.d.). The bovine foot skin microbiota is associated with host genotype and the development of infectious digital dermatitis lesions. Microbiome, 11(1). doi:10.1186/s40168-022-01440-7
2021
Correction: Phage gene expression and host responses lead to infection-dependent costs of CRISPR immunity.
Meaden, S., Capria, L., Alseth, E., Gandon, S., Biswas, A., Lenzi, L., . . . Westra, E. R. (2021). Correction: Phage gene expression and host responses lead to infection-dependent costs of CRISPR immunity.. The ISME journal, 15(8), 2491. doi:10.1038/s41396-020-00846-1
Impact of Interleukin 10 Deficiency on Intestinal Epithelium Responses to Inflammatory Signals
Papoutsopoulou, S., Pollock, L., Walker, C., Tench, W., Samad, S. S., Bergey, F., . . . Campbell, B. J. (2021). Impact of Interleukin 10 Deficiency on Intestinal Epithelium Responses to Inflammatory Signals. FRONTIERS IN IMMUNOLOGY, 12. doi:10.3389/fimmu.2021.690817
The dysbiosis of ovine foot microbiome during the development and treatment of contagious ovine digital dermatitis
Duncan, J. S., Angell, J. W., Richards, P., Lenzi, L., Staton, G. J., Grove-White, D., . . . Evans, N. J. (2021). The dysbiosis of ovine foot microbiome during the development and treatment of contagious ovine digital dermatitis. ANIMAL MICROBIOME, 3(1). doi:10.1186/s42523-021-00078-4
Phage gene expression and host responses lead to infection-dependent costs of CRISPR immunity
Meaden, S., Capria, L., Alseth, E., Gandon, S., Biswas, A., Lenzi, L., . . . Westra, E. R. (2021). Phage gene expression and host responses lead to infection-dependent costs of CRISPR immunity. ISME JOURNAL, 15(2), 534-544. doi:10.1038/s41396-020-00794-w
Inter-kingdom relationships in Crohn's disease explored using a multi-omics approach
Frau, A., Ijaz, U. Z., Slater, R., Jonkers, D., Penders, J., Campbell, B. J., . . . Probert, C. S. J. (2021). Inter-kingdom relationships in Crohn's disease explored using a multi-omics approach. GUT MICROBES, 13(1). doi:10.1080/19490976.2021.1930871
2020
Maternal influences on oral and faecal microbiota maturation in neonatal calves in beef and dairy production systems
Barden, M., Richards-Rios, P., Ganda, E., Lenzi, L., Eccles, R., Neary, J., . . . Oikonomou, G. (2020). Maternal influences on oral and faecal microbiota maturation in neonatal calves in beef and dairy production systems. Animal Microbiome, 2. doi:10.1186/s42523-020-00049-1
Characterization of Circulating Clostridium difficile Strains, Host Response and Intestinal Microbiome in Hospitalized Children With Diarrhea
Lees, E. A., Carrol, E. D., Ellaby, N. A. F., Roberts, P., Corless, C. E., Lenzi, L., . . . Pirmohamed, M. (2020). Characterization of Circulating Clostridium difficile Strains, Host Response and Intestinal Microbiome in Hospitalized Children With Diarrhea. The Pediatric infectious disease journal, 39(3), 221-228. doi:10.1097/inf.0000000000002559
2019
Host genetics and geography influence microbiome composition in the sponge <i>Ircinia campana</i>
Griffiths, S. M., Antwis, R. E., Lenzi, L., Lucaci, A., Behring, D. C., Butler, M. J., & Preziosi, R. F. (2019). Host genetics and geography influence microbiome composition in the sponge <i>Ircinia campana</i>. JOURNAL OF ANIMAL ECOLOGY, 88(11), 1684-1695. doi:10.1111/1365-2656.13065
DNA extraction and amplicon production strategies deeply influence the outcome of gut mycobiome studies
Frau, A., Kenny, J. G., Lenzi, L., Campbell, B. J., Ijaz, U. Z., Duckworth, C. A., . . . Probert, C. S. J. (2019). DNA extraction and amplicon production strategies deeply influence the outcome of gut mycobiome studies. SCIENTIFIC REPORTS, 9. doi:10.1038/s41598-019-44974-x
Application of long read sequencing to determine expressed antigen diversity in Trypanosoma brucei infections
Jayaraman, S., Harris, C., Paxton, E., Donachie, A. -M., Vaikkinen, H., McCulloch, R., . . . Morrison, L. (2019). Application of long read sequencing to determine expressed antigen diversity in Trypanosoma brucei infections. PLoS Neglected Tropical Diseases. doi:10.1371/journal.pntd.0007262
2018
16S rRNA amplicon sequencing reveals a polymicrobial nature of complicated claw horn disruption lesions and interdigital phlegmon in dairy cattle
Bay, V., Griffiths, B., Carter, S., Evans, N. J., Lenzi, L., Bicalho, R., & Oikonomou, G. (2018). 16S rRNA amplicon sequencing reveals a polymicrobial nature of complicated claw horn disruption lesions and interdigital phlegmon in dairy cattle. Scientific Reports, 8. doi:10.1038/s41598-018-33993-9
Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments
Hicks, N., Liu, X., Gregory, R., Kenny, J., Lucaci, A., Lenzi, L., . . . Duncan, K. R. (2018). Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments. FRONTIERS IN MICROBIOLOGY, 9. doi:10.3389/fmicb.2018.01730
2017
Comparison Of The Human Gastric Microbiota In Hypochlorhydric States Arising As A Result Of Helicobacter pylori-Induced Atrophic Gastritis, Autoimmune Atrophic Gastritis And Proton Pump Inhibitor Use
parsons, B. N., Ijaz, U. Z., D'Amore, R., Burkitt, M. D., Eccles, R., Lenzi, L., . . . Pritchard, D. M. (2017). Comparison Of The Human Gastric Microbiota In Hypochlorhydric States Arising As A Result Of Helicobacter pylori-Induced Atrophic Gastritis, Autoimmune Atrophic Gastritis And Proton Pump Inhibitor Use. PLoS Pathogens. doi:10.1101/144907
Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use
Parsons, B. N., Ijaz, U. Z., D'Amore, R., Burkitt, M. D., Eccles, R., Lenzi, L., . . . Pritchard, D. M. (2017). Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use. PLoS Pathogens, 13(11). doi:10.1371/journal.ppat.1006653
2016
Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community
Gomez, P., Paterson, S., De Meester, L., Liu, X., Lenzi, L., Sharma, M. D., . . . Buckling, A. (2016). Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community. Nature Communications, 7. doi:10.1038/ncomms12453
2015
The Gut Microbiota of Wild Mice
Weldon, L., Abolins, S., Lenzi, L., Bourne, C., Riley, E. M., & Viney, M. (2015). The Gut Microbiota of Wild Mice. PLOS ONE, 10(8). doi:10.1371/journal.pone.0134643
ePS06.1 Stenotrophomonas maltophilia is increased in patients with cystic fibrosis-related diabetes and displays enhanced growth under physiologically-relevant levels of glucose
Fothergill, J. L., Dyce, P., Jones, G. H., Hickey, G., D'Amore, L., Lenzi, L., . . . Walshaw, M. J. (2015). ePS06.1 Stenotrophomonas maltophilia is increased in patients with cystic fibrosis-related diabetes and displays enhanced growth under physiologically-relevant levels of glucose. Journal of Cystic Fibrosis, 14, S53. doi:10.1016/s1569-1993(15)30169-7
Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes (vol 5, 3979, 2014)
Ilott, N. E., Heward, J. A., Roux, B., Tsitsiou, E., Fenwick, P. S., Lenzi, L., . . . Lindsay, M. A. (2015). Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes (vol 5, 3979, 2014). NATURE COMMUNICATIONS, 6. doi:10.1038/ncomms7814
2014
Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes
Ilott, N. E., Heward,, J. A., Roux,, B., Tsitsiou,, E., Fenwick,, P. S., Lenzi,, L., . . . Lindsay,, M. A. (2014). Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes. Nature Communications, 5. doi:10.1038/ncomms4979
2012
From a Single Whole Exome Read to Notions of Clinical Screening: Primary Ciliary Dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula
AlSaadi, M. M., Gaunt, T. R., Boustred, C. R., Guthrie, P. A. I., Liu, X., Lenzi, L., . . . Day, I. N. M. (2012). From a Single Whole Exome Read to Notions of Clinical Screening: Primary Ciliary Dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula. ANNALS OF HUMAN GENETICS, 76, 211-220. doi:10.1111/j.1469-1809.2012.00704.x
From a single whole exome read to notions of clinical screening: primary ciliary dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula
Al Saadi, M. M., Gaunt, T. R., Boustred, C. R., Guthrie, P. A., Liu, X., Lenzi, L., . . . Day, I. N. M. (2012). From a single whole exome read to notions of clinical screening: primary ciliary dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula. Annals of Human Genetics, 76(3), 211-220.