Publications
2024
Phosphorylation in the <i>Plasmodium falciparum</i> Proteome: A Meta-Analysis of Publicly Available Data Sets.
Camacho, O. J. M., Ramsbottom, K. A., Prakash, A., Sun, Z., Perez Riverol, Y., Bowler-Barnett, E., . . . Jones, A. R. (2024). Phosphorylation in the <i>Plasmodium falciparum</i> Proteome: A Meta-Analysis of Publicly Available Data Sets.. Journal of proteome research. doi:10.1021/acs.jproteome.4c00418
Searching for Sulfotyrosines (sY) in a HA(pY)STACK
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome.
Ramsbottom, K. A., Prakash, A., Perez-Riverol, Y., Camacho, O. M., Sun, Z., Kundu, D. J., . . . Jones, A. R. (2024). Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome.. Journal of proteome research, 23(7), 2518-2531. doi:10.1021/acs.jproteome.4c00187
2023
Phosphorylation in the<i>Plasmodium falciparum</i>proteome: A meta-analysis of publicly available data sets
A meta-analysis of rice phosphoproteomics data to understand variation in cell signalling across the rice pan-genome.
Mesenchymal Stromal Cell Secretome Is Affected by Tissue Source and Donor Age.
Turlo, A. J., Hammond, D. E., Ramsbottom, K. A., Soul, J., Gillen, A., McDonald, K., & Peffers, M. J. (2023). Mesenchymal Stromal Cell Secretome Is Affected by Tissue Source and Donor Age.. Stem cells (Dayton, Ohio), 41(11), 1047-1059. doi:10.1093/stmcls/sxad060
Assessing Multiple Evidence Streams to Decide on Confidence for Identification of Post-Translational Modifications, within and Across Data Sets
Camacho, O. M., Ramsbottom, K. A., Collins, A., & Jones, A. R. (2023). Assessing Multiple Evidence Streams to Decide on Confidence for Identification of Post-Translational Modifications, within and Across Data Sets. JOURNAL OF PROTEOME RESEARCH, 22(6), 1828-1842. doi:10.1021/acs.jproteome.2c00823
2022
Assessing multiple evidence streams to decide on confidence for identification of post-translational modifications, within and across data sets
Method for Independent Estimation of the False Localization Rate for Phosphoproteomics
Ramsbottom, K. A., Prakash, A., Riverol, Y. P., Camacho, O. M., Martin, M. -J., Vizcaino, J. A., . . . Jones, A. R. (2022). Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. JOURNAL OF PROTEOME RESEARCH. doi:10.1021/acs.jproteome.1c00827
2021
A method for independent estimation of false localisation rate for phosphoproteomics
Ramsbottom, K., Prakash, A., Riverol, Y. P., Camacho, O. M., Martin, M., Vizcaíno, J. A., . . . Jones, A. (2021). A method for independent estimation of false localisation rate for phosphoproteomics. doi:10.1101/2021.10.18.464791
Bisphenol A Inhibits the Transporter Function of the Blood-Brain Barrier by Directly Interacting with the ABC Transporter Breast Cancer Resistance Protein (BCRP)
Engdahl, E., van Schijndel, M. D. M., Voulgaris, D., Di Criscio, M., Ramsbottom, K. A., Rigden, D. J., . . . Ruegg, J. (2021). Bisphenol A Inhibits the Transporter Function of the Blood-Brain Barrier by Directly Interacting with the ABC Transporter Breast Cancer Resistance Protein (BCRP). INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(11). doi:10.3390/ijms22115534
2020
Informatics investigations into anti-thyroid drug induced agranulocytosis associated with multiple HLA-B alleles
Ramsbottom, K. A., Carr, D. F., Rigden, D. J., & Jones, A. R. (2020). Informatics investigations into anti-thyroid drug induced agranulocytosis associated with multiple HLA-B alleles. PLOS ONE, 15(2). doi:10.1371/journal.pone.0220754
Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza, F. F., McCabe, A., Santos, E. J. M. D., Jones, J., Takeshita, L., Ortega-Rivera, N. D., . . . Jones, A. R. (n.d.). Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools. Nucleic Acids Research. doi:10.1093/nar/gkz1029
Informatics investigations into HLA-mediated adverse drug reactions
Ramsbottom, K. (2020). Informatics investigations into HLA-mediated adverse drug reactions.
2018
Critical assessment of approaches for molecular docking to elucidate associations of HLA alleles with adverse drug reactions
Ramsbottom, K. A., Carr, D. F., Jones, A. R., & Rigden, D. J. (2018). Critical assessment of approaches for molecular docking to elucidate associations of HLA alleles with adverse drug reactions. MOLECULAR IMMUNOLOGY, 101, 488-499. doi:10.1016/j.molimm.2018.08.003