Publications
Selected publications
- The clinical and microbiological utility of inhaled aztreonam lysine for the treatment of acute pulmonary exacerbations of cystic fibrosis: An open-label randomised crossover study (AZTEC-CF) (Journal article - 2021)
- Transmission, adaptation and geographical spread of the<i> Pseudomonas</i><i> aeruginosa</i> Liverpool epidemic strain (Journal article - 2021)
- A megaplasmid family driving dissemination of multidrug resistance in Pseudomonas. (Journal article - 2020)
- Evolutionary trade-offs associated with loss of PmrB function in host-adapted Pseudomonas aeruginosa (Journal article - 2018)
- Pseudomonas aeruginosa adaptation and diversification in the non-cystic fibrosis bronchiectasis lung (Journal article - 2017)
- Exploiting lung adaptation and phage steering to clear pan-resistant Pseudomonas aeruginosa infections in vivo (Journal article - 2024)
- Multi-layered genome defences in bacteria. (Journal article - 2024)
- Selection of Relevant Bacterial Strains for Novel Therapeutic Testing: a Guidance Document for Priority Cystic Fibrosis Lung Pathogens (Journal article - 2022)
2025
Genotypic and phenotypic analyses of two distinct sets of Pseudomonas aeruginosa urinary tract isolates
Ebrahim, H., Haldenby, S., Moore, M. P., Dashti, A. A., Floyd, R. V., & Fothergill, J. L. (2025). Genotypic and phenotypic analyses of two distinct sets of Pseudomonas aeruginosa urinary tract isolates. Journal of medical microbiology, 74(2). doi:10.1099/jmm.0.001971
Cannabis and cannabinoid-microbiome interactions in varied clinical contexts: A comprehensive systematic review.
Thu, M. S., Campbell, B. J., Hirankarn, N., Nopsopon, T., Ondee, T., Hall, S. R., . . . Pongpirul, K. (2025). Cannabis and cannabinoid-microbiome interactions in varied clinical contexts: A comprehensive systematic review.. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie, 182, 117764. doi:10.1016/j.biopha.2024.117764
Gelatin emulsion gels loaded with host defence peptides for the treatment of antibiotic-resistant infections.
Mann, K., Aveyard, J., Dallos Ortega, M., Chen, T., Koduri, M. P., Fothergill, J. L., . . . D'Sa, R. A. (2025). Gelatin emulsion gels loaded with host defence peptides for the treatment of antibiotic-resistant infections.. Biomaterials advances, 166, 214071. doi:10.1016/j.bioadv.2024.214071
2024
S42 Pseudomonas aeruginosa genetic variants associated with increased exacerbations in bronchiectasis
Hull, R. C., Harrington, N., Gilmour, A., Long, M. B., Stobo, J., Kottara, A., . . . Chalmers, J. D. (2024). S42 Pseudomonas aeruginosa genetic variants associated with increased exacerbations in bronchiectasis. In ‘Where the Wild Things Are’ – Infection and inflammation in bronchiectasis and NTM (pp. A35-A36). BMJ Publishing Group Ltd and British Thoracic Society. doi:10.1136/thorax-2024-btsabstracts.48
Galleria mellonella as an Antimicrobial Screening Model.
Barton, T. E., Duignan, L., Kadioglu, A., Fothergill, J. L., & Neill, D. R. (2024). Galleria mellonella as an Antimicrobial Screening Model.. Journal of visualized experiments : JoVE, (212). doi:10.3791/67210
Ecological and evolutionary mechanisms driving within-patient emergence of antimicrobial resistance
Shepherd, M. J., Fu, T., Harrington, N. E., Kottara, A., Cagney, K., Chalmers, J. D., . . . Brockhurst, M. A. (n.d.). Ecological and evolutionary mechanisms driving within-patient emergence of antimicrobial resistance. Nature Reviews Microbiology. doi:10.1038/s41579-024-01041-1
Optimization of a DNA extraction protocol for improving bacterial and fungal classification based on Nanopore sequencing.
Soe Thu, M., Sawaswong, V., Chanchaem, P., Klomkliew, P., Campbell, B. J., Hirankarn, N., . . . Payungporn, S. (2024). Optimization of a DNA extraction protocol for improving bacterial and fungal classification based on Nanopore sequencing.. Access microbiology, 6(10), 000754.v3. doi:10.1099/acmi.0.000754.v3
Global genomic diversity of Pseudomonas aeruginosa in bronchiectasis
Harrington, N. E., Kottara, A., Cagney, K., Shepherd, M. J., Grimsey, E. M., Fu, T., . . . Paterson, S. (2024). Global genomic diversity of Pseudomonas aeruginosa in bronchiectasis. Journal of Infection, 106275. doi:10.1016/j.jinf.2024.106275