Publications
Selected publications
- Multi-omics Study of <i>Planobispora rosea</i>, Producer of the Thiopeptide Antibiotic GE2270A (Journal article - 2021)
- Biotechnological application of Streptomyces for the production of clinical drugs and other bioactive molecules. (Journal article - 2022)
- Integrated Probabilistic Annotation: A Bayesian-Based Annotation Method for Metabolomic Profiles Integrating Biochemical Connections, Isotope Patterns, and Adduct Relationships (Journal article - 2019)
- Computational identification of co-evolving multi-gene modules in microbial biosynthetic gene clusters (Journal article - 2019)
- ipaPy2: Integrated Probabilistic Annotation (IPA) 2.0-an improved Bayesian-based method for the annotation of LC-MS/MS untargeted metabolomics data (Journal article - 2023)
2024
An adaptable <i>in silico</i> ensemble model of the arachidonic acid cascade.
Uttley, M., Horne, G., Tsigkinopoulou, A., Del Carratore, F., Hawari, A., Kiezel-Tsugunova, M., . . . Nicolaou, A. (2024). An adaptable <i>in silico</i> ensemble model of the arachidonic acid cascade.. Molecular omics, 20(7), 453-468. doi:10.1039/d3mo00187c
2023
ipaPy2: Integrated Probabilistic Annotation (IPA) 2.0-an improved Bayesian-based method for the annotation of LC-MS/MS untargeted metabolomics data
Del Carratore, F., Eagles, W., Borka, J., & Breitling, R. (2023). ipaPy2: Integrated Probabilistic Annotation (IPA) 2.0-an improved Bayesian-based method for the annotation of LC-MS/MS untargeted metabolomics data. BIOINFORMATICS, 39(7). doi:10.1093/bioinformatics/btad455
2022
Biotechnological application of Streptomyces for the production of clinical drugs and other bioactive molecules.
Del Carratore, F., Hanko, E. K., Breitling, R., & Takano, E. (2022). Biotechnological application of Streptomyces for the production of clinical drugs and other bioactive molecules.. Current opinion in biotechnology, 77, 102762. doi:10.1016/j.copbio.2022.102762
Reference-Grade Genome and Large Linear Plasmid of <i>Streptomyces rimosus</i>: Pushing the Limits of Nanopore Sequencing
Slemc, L., Jakse, J., Filisetti, A., Baranasic, D., Rodriguez-Garcia, A., Del Carratore, F., . . . Tome, M. (2022). Reference-Grade Genome and Large Linear Plasmid of <i>Streptomyces rimosus</i>: Pushing the Limits of Nanopore Sequencing. MICROBIOLOGY SPECTRUM, 10(2). doi:10.1128/spectrum.02434-21
2021
Multi-omics Study of <i>Planobispora rosea</i>, Producer of the Thiopeptide Antibiotic GE2270A
Del Carratore, F., Iorio, M., Perez-Bonilla, M., Schmidt, K., Perez-Redondo, R., Sosio, M., . . . Takano, E. (2021). Multi-omics Study of <i>Planobispora rosea</i>, Producer of the Thiopeptide Antibiotic GE2270A. MSYSTEMS, 6(3). doi:10.1128/mSystems.00341-21
Synthetic biology approaches to actinomycete strain improvement
Breitling, R., Avbelj, M., Bilyk, O., Del Carratore, F., Filisetti, A., Hanko, E. K. R., . . . Takano, E. (2021). Synthetic biology approaches to actinomycete strain improvement. FEMS MICROBIOLOGY LETTERS, 368(10). doi:10.1093/femsle/fnab060