Publications
2023
Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples
Bassano, I., Ramachandran, V. K., Khalifa, M. S., Lilley, C. J., Brown, M. R., van Aerle, R., . . . Grimsley, J. M. S. (2023). Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples. Microbial Genomics, 9(4). doi:10.1099/mgen.0.000933
2022
City-wide wastewater genomic surveillance through the successive emergence of SARS-CoV-2 Alpha and Delta variants
Brunner, F. S., Brown, M. R., Bassano, I., Denise, H., Khalifa, M. S., Wade, M. J., . . . Paterson, S. (2022). City-wide wastewater genomic surveillance through the successive emergence of SARS-CoV-2 Alpha and Delta variants. WATER RESEARCH, 226. doi:10.1016/j.watres.2022.119306
Microbiome function predicts amphibian chytridiomycosis disease dynamics
Bates, K. A., Sommer, U., Hopkins, K. P., Shelton, J. M. G., Wierzbicki, C., Sergeant, C., . . . Fisher, M. C. (2022). Microbiome function predicts amphibian chytridiomycosis disease dynamics. MICROBIOME, 10(1). doi:10.1186/s40168-021-01215-6
2021
The impact of viral mutations on recognition by SARS-CoV-2 specific T cells
de, S. T. I., Liu, G., Lindsey, B. B., Dong, D., Moore, S. C., Hsu, N. S., . . . Dong, T. (2021). The impact of viral mutations on recognition by SARS-CoV-2 specific T cells. ISCIENCE, 24(11). doi:10.1016/j.isci.2021.103353
Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic
Jackson, B., Boni, M. F., Bull, M. J., Colleran, A., Colquhoun, R. M., Darby, A. C., . . . Rambaut, A. (2021). Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic. Cell. doi:10.1016/j.cell.2021.08.014
Post-epizootic microbiome associations across communities of neotropical amphibians
Jervis, P., Pintanel, P., Hopkins, K., Wierzbicki, C., Shelton, J. M. G., Skelly, E., . . . Fisher, M. C. (2021). Post-epizootic microbiome associations across communities of neotropical amphibians. MOLECULAR ECOLOGY, 30(5), 1322-1335. doi:10.1111/mec.15789
2019
Compensatory growth renders Tcf7l1a dispensable for eye formation despite its requirement in eye field specification
Young, R. M., Hawkins, T. A., Cavodeassi, F., Stickney, H. L., Schwarz, Q., Lawrence, L. M., . . . Wilson, S. W. (2019). Compensatory growth renders Tcf7l1a dispensable for eye formation despite its requirement in eye field specification. ELIFE, 8. doi:10.7554/eLife.40093
2018
Compensatory mechanisms render Tcf7l1a dispensable for eye formation despite its cell-autonomous requirement in eye field specification
Climate structuring of <i>Batrachochytrium dendrobatidis</i> infection in the threatened amphibians of the northern Western Ghats, India
Thorpe, C. J., Lewis, T. R., Fisher, M. C., Wierzbicki, C. J., Kulkarni, S., Pryce, D., . . . Knight, M. E. (2018). Climate structuring of <i>Batrachochytrium dendrobatidis</i> infection in the threatened amphibians of the northern Western Ghats, India. ROYAL SOCIETY OPEN SCIENCE, 5(6). doi:10.1098/rsos.180211
Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi
Fisher, M. C., Ghosh, P., Shelton, J. M. G., Bates, K., Brookes, L., Wierzbicki, C., . . . Garner, T. W. J. (2018). Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi. SCIENTIFIC REPORTS, 8. doi:10.1038/s41598-018-24472-2
Recent Asian origin of chytrid fungi causing global amphibian declines
O'Hanlon, S. J., Rieux, A., Farrer, R. A., Rosa, G. M., Waldman, B., Bataille, A., . . . Fisher, M. C. (2018). Recent Asian origin of chytrid fungi causing global amphibian declines. SCIENCE, 360(6389), 621-+. doi:10.1126/science.aar1965
2017
Chytrid fungus infection in zebrafish demonstrates that the pathogen can parasitize non-amphibian vertebrate hosts
Liew, N., Moya, M. J. M., Wierzbicki, C. J., Hollinshead, M., Dillon, M. J., Thornton, C. R., . . . Mostowy, S. (2017). Chytrid fungus infection in zebrafish demonstrates that the pathogen can parasitize non-amphibian vertebrate hosts. NATURE COMMUNICATIONS, 8. doi:10.1038/ncomms15048
2016
Antagonism between Gdf6a and retinoic acid pathways controls timing of retinal neurogenesis and growth of the eye in zebrafish
Valdivia, L. E., Lamb, D. B., Horner, W., Wierzbicki, C., Tafessu, A., Williams, A. M., . . . Cerveny, K. L. (2016). Antagonism between Gdf6a and retinoic acid pathways controls timing of retinal neurogenesis and growth of the eye in zebrafish. DEVELOPMENT, 143(7), 1087-1098. doi:10.1242/dev.130922
2012
<i>In vivo</i> Wnt signaling tracing through a transgenic biosensor fish reveals novel activity domains
Moro, E., Ozhan-Kizil, G., Mongera, A., Beis, D., Wierzbicki, C., Young, R. M., . . . Argenton, F. (2012). <i>In vivo</i> Wnt signaling tracing through a transgenic biosensor fish reveals novel activity domains. DEVELOPMENTAL BIOLOGY, 366(2), 327-340. doi:10.1016/j.ydbio.2012.03.023