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Publications

Selected publications

  1. Global diversity and evolution of<i>Salmonella</i>Panama, an understudied serovar causing gastrointestinal and invasive disease worldwide: a genomic epidemiology study (Preprint - 2024)
  2. An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes (Journal article - 2021)
  3. Isolation and Characterisation of Bacteriophages with Activity against Invasive Non-Typhoidal Salmonella Causing Bloodstream Infection in Malawi. (Journal article - 2021)
  4. Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa (Journal article - 2020)
  5. Marine phage genomics: the tip of the iceberg. (Journal article - 2016)
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2024

Thinking Phage Innovations Through Evolution and Ecology

Brives, C., Froissart, R., Perez-Sepulveda, B., & Le Marrec, C. (2024). Thinking Phage Innovations Through Evolution and Ecology. PHAGE, 5(1), 5-13. doi:10.1089/phage.2023.0047

DOI
10.1089/phage.2023.0047
Journal article

2023

Class 1 integrons in clinical and swine industry isolates of Salmonella Typhimurium from Colombia, dating 1997 to 2017

Florez-Delgado, N. Y., Ubillus, E. N., Perez-Sepulveda, B., Ospina-Rios, E. L., Carrascal-Camacho, A. K., Chamorro-Tobar, I. C., . . . Wiesner, M. (2023). Class 1 integrons in clinical and swine industry isolates of Salmonella Typhimurium from Colombia, dating 1997 to 2017. JOURNAL OF MEDICAL MICROBIOLOGY, 72(6). doi:10.1099/jmm.0.001704

DOI
10.1099/jmm.0.001704
Journal article

Genome- wide fitness analysis identifies genes required for in vitro growth and macrophage infection by African and global epidemic pathovariants of Salmonella enterica Enteritidis

Fong, W. Y., Canals, R., Predeus, A. V., Perez-Sepulveda, B., Wenner, N., Lora, L. L., . . . Hinton, J. C. D. (2023). Genome- wide fitness analysis identifies genes required for in vitro growth and macrophage infection by African and global epidemic pathovariants of Salmonella enterica Enteritidis. MICROBIAL GENOMICS, 9(5). doi:10.1099/mgen.0.001017

DOI
10.1099/mgen.0.001017
Journal article

Enhancing Infectious Intestinal Disease diagnosis through metagenomic and metatranscriptomic sequencing of over 1000 human diarrhoeal samples

DOI
10.1101/2023.04.03.23288067
Preprint

The Challenge Non-Typhoidal Salmonella (CHANTS) Consortium: Development of a non-typhoidal Salmonella controlled human infection model: Report from a consultation group workshop, 05 July 2022, London, UK

Smith, C., Smith, E., Chiu, C., Hinton, J., Perez Sepulveda, B., Gordon, M., . . . CHANTS Consortium. (2023). The Challenge Non-Typhoidal Salmonella (CHANTS) Consortium: Development of a non-typhoidal Salmonella controlled human infection model: Report from a consultation group workshop, 05 July 2022, London, UK. doi:10.12688/wellcomeopenres.19012.1

DOI
10.12688/wellcomeopenres.19012.1
Journal article

2022

Case-control investigation of invasive Salmonella disease in Malawi reveals no evidence of environmental or animal transmission of invasive strains, and supports human to human transmission.

Koolman, L., Prakash, R., Diness, Y., Msefula, C., Nyirenda, T. S., Olgemoeller, F., . . . Gordon, M. A. (2022). Case-control investigation of invasive Salmonella disease in Malawi reveals no evidence of environmental or animal transmission of invasive strains, and supports human to human transmission.. PLoS neglected tropical diseases, 16(12), e0010982. doi:10.1371/journal.pntd.0010982

DOI
10.1371/journal.pntd.0010982
Journal article

2021

Characteristics of <i>Salmonella</i> Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study

Kasumba, I. N., Pulford, C. V., Perez-Sepulveda, B. M., Sen, S., Sayed, N., Permala-Booth, J., . . . Tennant, S. M. (2021). Characteristics of <i>Salmonella</i> Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study. CLINICAL INFECTIOUS DISEASES, 73(4), 631-641. doi:10.1093/cid/ciab051

DOI
10.1093/cid/ciab051
Journal article

Complete Genome Sequences of African <i>Salmonella enterica</i> Serovar Enteritidis Clinical Isolates Associated with Bloodstream Infection

Perez-Sepulveda, B. M., Predeus, A. V., Fong, W. Y., Parry, C. M., Cheesbrough, J., Wigley, P., . . . Hinton, J. C. D. (2021). Complete Genome Sequences of African <i>Salmonella enterica</i> Serovar Enteritidis Clinical Isolates Associated with Bloodstream Infection. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 10(12). doi:10.1128/MRA.01452-20

DOI
10.1128/MRA.01452-20
Journal article

Isolation and Characterisation of Bacteriophages with Activity against Invasive Non-Typhoidal Salmonella Causing Bloodstream Infection in Malawi.

Rodwell, E., Wenner, N., Pulford, C., Cai, Y., Bowers-Barnard, A., Beckett, A., . . . Perez Sepulveda, B. (n.d.). Isolation and characterisation of bacteriophages with activity against invasive non-typhoidal Salmonella causing bloodstream infection in Malawi. Viruses. doi:10.3390/v13030478

DOI
10.3390/v13030478
Journal article

Detection of Bacteriophages: Sequence-Based Systems

Owen, S. V., Perez-Sepulveda, B. M., & Adriaenssens, E. M. (2021). Detection of Bacteriophages: Sequence-Based Systems. In Bacteriophages (pp. 621-644). Springer International Publishing. doi:10.1007/978-3-319-41986-2_19

DOI
10.1007/978-3-319-41986-2_19
Chapter

2020

Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa

Pulford, C., Perez-Sepulveda, B. M., Canals, R., Bevington, J. A., Bengtsson, R. J., Wenner, N., . . . Hinton, J. (2020). Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa. Nature Microbiology. doi:10.1038/s41564-020-00836-1

DOI
10.1038/s41564-020-00836-1
Journal article

<i>Salmonella</i> identified in pigs in Kenya and Malawi reveals the potential for zoonotic transmission in emerging pork markets

Wilson, C. N., Pulford, C. V., Akoko, J., Perez Sepulveda, B., Predeus, A. V., Bevington, J., . . . Fevre, E. M. (2020). <i>Salmonella</i> identified in pigs in Kenya and Malawi reveals the potential for zoonotic transmission in emerging pork markets. PLOS NEGLECTED TROPICAL DISEASES, 14(11). doi:10.1371/journal.pntd.0008796

DOI
10.1371/journal.pntd.0008796
Journal article

Identification of genes that contribute to fitness of African and Global clades of Salmonella Enteritidis during infection of macrophages

Yee Fong, W., Canals, R., Predeus, A., Perez-Sepulveda, B., & A. Feasey, N. (2020). Identification of genes that contribute to fitness of African and Global clades of Salmonella Enteritidis during infection of macrophages. Access Microbiology, 2(7A). doi:10.1099/acmi.ac2020.po0739

DOI
10.1099/acmi.ac2020.po0739
Journal article

2019

Detection of Bacteriophages: Sequence-Based Systems

Owen, S. V., Perez-Sepulveda, B. M., & Adriaenssens, E. M. (2019). Detection of Bacteriophages: Sequence-Based Systems. In Bacteriophages (pp. 1-25). Springer International Publishing. doi:10.1007/978-3-319-40598-8_19-1

DOI
10.1007/978-3-319-40598-8_19-1
Chapter

2018

Functional Transcriptomics for Bacterial Gene Detectives

Perez-Sepulveda, B. M., & Hinton, J. C. D. (n.d.). Functional Transcriptomics for Bacterial Gene Detectives. In Regulating with RNA in Bacteria and Archaea (pp. 547-561). ASM Press. doi:10.1128/9781683670247.ch32

DOI
10.1128/9781683670247.ch32
Chapter

Functional Transcriptomics for Bacterial Gene Detectives

Perez-Sepulveda, B. M., & Hinton, J. C. D. (2018). Functional Transcriptomics for Bacterial Gene Detectives. MICROBIOLOGY SPECTRUM, 6(5). doi:10.1128/microbiolspec.RWR-0033-2018

DOI
10.1128/microbiolspec.RWR-0033-2018
Journal article

Relative stability of ploidy in a marine <i>Synechococcus</i> across various growth conditions

Perez-Sepulveda, B., Pitt, F., N'Guyen, A. N., Ratin, M., Garczarek, L., Millard, A., & Scanlan, D. J. (2018). Relative stability of ploidy in a marine <i>Synechococcus</i> across various growth conditions. ENVIRONMENTAL MICROBIOLOGY REPORTS, 10(4), 428-432. doi:10.1111/1758-2229.12614

DOI
10.1111/1758-2229.12614
Journal article

2016

2015

Spontaneous Deletion of an "ORFanage" Region Facilitates Host Adaptation in a "Photosynthetic" Cyanophage

Puxty, R. J., Perez-Sepulveda, B., Rihtman, B., Evans, D. J., Millard, A. D., & Scanlan, D. J. (2015). Spontaneous Deletion of an "ORFanage" Region Facilitates Host Adaptation in a "Photosynthetic" Cyanophage. PLOS ONE, 10(7). doi:10.1371/journal.pone.0132642

DOI
10.1371/journal.pone.0132642
Journal article