Publications
Selected publications
- DNA Topology (Book - 2005)
- The ancestral role of ATP hydrolysis in type II topoisomerases: prevention of DNA double-strand breaks. (Journal article - 2011)
- Base-pairing preferences, physicochemical properties and mutational behaviour of the DNA lesion 8-nitroguanine † (Journal article - 2012)
- How do type II topoisomerases use ATP hydrolysis to simplify DNA topology beyond equilibrium? Investigating the relaxation reaction of nonsupercoiling type II topoisomerases. (Journal article - 2009)
2021
Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides
Pyne, A. L. B., Noy, A., Main, K. H. S., Velasco-Berrelleza, V., Piperakis, M. M., Mitchenall, L. A., . . . Harris, S. A. (2021). Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides. NATURE COMMUNICATIONS, 12(1). doi:10.1038/s41467-021-21243-y
2016
Topology simplification: Important biological phenomenon or evolutionary relic? Comment on "Disentangling DNA molecules" by Alexander Vologodskii
Bates, A. D., & Maxwell, A. (2016). Topology simplification: Important biological phenomenon or evolutionary relic? Comment on "Disentangling DNA molecules" by Alexander Vologodskii. PHYSICS OF LIFE REVIEWS, 18, 144-146. doi:10.1016/j.plrev.2016.07.007
LIFEPAL – Peer Assisted Learning in the School of Life Sciences
Alston, P. O., Hasan, E., Gu, Y., Voelkel, S., Bates, A., & Hatton, K. (2016). LIFEPAL – Peer Assisted Learning in the School of Life Sciences. In 14th Learning & Teaching Conference - 'Recognising and Sharing Teaching Excellence'. University of Liverpool, Liverpool, UK.
2015
Reflective research project assessment using PebblePad
Vieira De Mello Rigden, L., Bates, A., & Alston, P. (2015). Reflective research project assessment using PebblePad. Edge Hill University, Ormskirk, Lancashire.
Reflective research project assessment using PebblePad
Mello, L. V., Bates, A., & Alston, P. (2015). Reflective research project assessment using PebblePad. Edge Hill University, Ormskirk, Lancashire.
2014
Glycosylated yellow laccases of the basidiomycete Stropharia aeruginosa
Daroch, M., Houghton, C. A., Moore, J. K., Wilkinson, M. C., Carnell, A. J., Bates, A. D., & Iwanejko, L. A. (2014). Glycosylated yellow laccases of the basidiomycete Stropharia aeruginosa. Enzyme and Microbial Techenology, 58-59, 1-7. doi:10.1016/j.enzmictec.2014.02.003
2013
Topological aspects of DNA function and protein folding.
Stasiak, A., Bates, A. D., Buck, D. E., Harris, S. A., & Sumners, D. W. (2013). Topological aspects of DNA function and protein folding.. Biochemical Society transactions, 41(2), 491-493. doi:10.1042/bst20130006
Small DNA circles as probes of DNA topology
Bates, A. D., Noy, A., Piperakis, M. M., Harris, S. A., & Maxwell, A. (2013). Small DNA circles as probes of DNA topology. Biochemical Society Transactions.
2012
Base-pairing preferences, physicochemical properties and mutational behaviour of the DNA lesion 8-nitroguanine †
Bhamra, I., Compagnone-Post, P., O’Neil, I. A., Iwanejko, L. A., Bates, A. D., & Cosstick, R. (2012). Base-pairing preferences, physicochemical properties and mutational behaviour of the DNA lesion 8-nitroguanine †. Nucleic Acids Research, 40(21), 11126-11138. doi:10.1093/nar/gks799
Binding of two DNA molecules by type II topoisomerases for decatenation.
Kumar, R., Riley, J. E., Parry, D., Bates, A. D., & Nagaraja, V. (2012). Binding of two DNA molecules by type II topoisomerases for decatenation.. Nucleic acids research, 40(21), 10904-10915. doi:10.1093/nar/gks843
Instant Notes in Molecular Biology
McLennan, A. G., Bates, A. D., Turner, P. C., & White, M. R. H. (2012). Instant Notes in Molecular Biology. New York: Taylor and Francis.
2011
The ancestral role of ATP hydrolysis in type II topoisomerases: prevention of DNA double-strand breaks.
Bates, A. D., Berger, J. M., & Maxwell, A. (2011). The ancestral role of ATP hydrolysis in type II topoisomerases: prevention of DNA double-strand breaks.. Nucleic acids research, 39(15), 6327-6339. doi:10.1093/nar/gkr258
2010
The role of ATP in the reactions of type II DNA topoisomerases.
Bates, A. D., & Maxwell, A. (2010). The role of ATP in the reactions of type II DNA topoisomerases.. Biochemical Society transactions, 38(2), 438-442. doi:10.1042/bst0380438
2009
How do type II topoisomerases use ATP hydrolysis to simplify DNA topology beyond equilibrium? Investigating the relaxation reaction of nonsupercoiling type II topoisomerases.
Stuchinskaya, T., Mitchenall, L. A., Schoeffler, A. J., Corbett, K. D., Berger, J. M., Bates, A. D., & Maxwell, A. (2009). How do type II topoisomerases use ATP hydrolysis to simplify DNA topology beyond equilibrium? Investigating the relaxation reaction of nonsupercoiling type II topoisomerases.. Journal of molecular biology, 385(5), 1397-1408. doi:10.1016/j.jmb.2008.11.056
2007
Energy coupling in type II topoisomerases: why do they hydrolyze ATP?
Bates, A. D., & Maxwell, A. (2007). Energy coupling in type II topoisomerases: why do they hydrolyze ATP?. Biochemistry, 46(27), 7929-7941. doi:10.1021/bi700789g
Enzymatic disassembly of DNA-gold nanostructures
Kanaras, A. G., Wang, Z., Brust, M., Cosstick, R., & Bates, A. D. (2007). Enzymatic disassembly of DNA-gold nanostructures. SMALL, 3(4), 590-594. doi:10.1002/smll.200600494
Site-specific ligation of DNA-modified gold nanoparticles activated by the restriction enzyme <i>Sty</i>I
Kanaras, A. G., Wang, Z., Hussain, I., Brust, M., Cosstick, R., & Bates, A. D. (2007). Site-specific ligation of DNA-modified gold nanoparticles activated by the restriction enzyme <i>Sty</i>I. SMALL, 3(1), 67-70. doi:10.1002/smll.200600464
2006
Gold nanoparticle wires made using RNA-based self-assembly
Cumming, D. R. S., Bates, A. D., Callen, B. P., Cooper, J. M., Cosstick, R., Geary, C., . . . Xu, C. (2006). Gold nanoparticle wires made using RNA-based self-assembly. Journal of Vacuum Science & Technology B: Microelectronics and Nanometer Structures Processing, Measurement, and Phenomena, 24(6), 3196-3199. doi:10.1116/1.2363404
Variable-temperature measurements of the single-molecule conductance of double-stranded DNA
van Zalinge, H., Schiffrin, D. J., Bates, A. D., Starikov, E. B., Wenzel, W., & Nichols, R. J. (2006). Variable-temperature measurements of the single-molecule conductance of double-stranded DNA. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 45(33), 5499-5502. doi:10.1002/anie.200601263
DNA topoisomerases: single gyrase caught in the act.
Bates, A. D. (2006). DNA topoisomerases: single gyrase caught in the act.. Current biology : CB, 16(6), R204-R206. doi:10.1016/j.cub.2006.02.029
Construction and characterization of a gold nanoparticle wire assembled using Mg2+-dependent RNA-RNA interactions.
Bates, A. D., Callen, B. P., Cooper, J. M., Cosstick, R., Geary, C., Glidle, A., . . . Cumming, D. R. S. (2006). Construction and characterization of a gold nanoparticle wire assembled using Mg2+-dependent RNA-RNA interactions.. Nano letters, 6(3), 445-448. doi:10.1021/nl052316g
Single-molecule conductance measurements of single- and double-stranded DNA oligonucleoticles
van Zalinge, H., Schiffrin, D. J., Bates, A. D., Haiss, W., Ulstrup, J., & Nichols, R. J. (2006). Single-molecule conductance measurements of single- and double-stranded DNA oligonucleoticles. CHEMPHYSCHEM, 7(1), 94-98. doi:10.1002/cphc.200500413
Variable-temperature measurements of the single-molecule conductance of double-stranded DNA
Van Zalinge, H., Schiffrin, D. J., Bates, A. D., Starikov, E. B., Wenzel, W., & Nichols, R. J. (2006). Variable-temperature measurements of the single-molecule conductance of double-stranded DNA. Angewandte Chemie - International Edition, 45(33), 5499-5502. doi:10.1002/anie.200601263
2005
Coupling ATP hydrolysis to DNA strand passage in type IIA DNA topoisomerases.
Maxwell, A., Costenaro, L., Mitelheiser, S., & Bates, A. D. (2005). Coupling ATP hydrolysis to DNA strand passage in type IIA DNA topoisomerases.. Biochemical Society transactions, 33(Pt 6), 1460-1464. doi:10.1042/bst0331460
DNA Topology
Bates, A. D., & Maxwell, A. (2005). DNA Topology. Oxford: Oxford University Press.
2004
Enzymatic DNA processing on gold nanoparticles
Wang, Z. X., Kanaras, A. G., Bates, A. D., Cosstick, R., & Brust, M. (2004). Enzymatic DNA processing on gold nanoparticles. JOURNAL OF MATERIALS CHEMISTRY, 14(4), 578-580. doi:10.1039/b314328g
2003
Towards multistep nanostructure synthesis: Programmed enzymatic self-assembly of DNA/gold systems
Kanaras, A. G., Wang, Z. X., Bates, A. D., Cosstick, R., & Brust, M. (2003). Towards multistep nanostructure synthesis: Programmed enzymatic self-assembly of DNA/gold systems. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 42(2), 191-+. doi:10.1002/anie.200390075