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Publications

Selected publications

  1. The industrial melanism mutation in British peppered moths is a transposable element. (Journal article - 2016)
  2. Genome sequence of the tsetse fly (Glossina morsitans): vector of African trypanosomiasis. (Journal article - 2014)
  3. Functional and Evolutionary Insights from the Genomes of Three Parasitoid <i>Nasonia</i> Species (Journal article - 2010)
  4. Analysis of gene expression from the <i>Wolbachia</i> genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis (Journal article - 2012)
  5. Integrated transcriptomic and proteomic analysis of the global response of <i>Wolbachia</i> to doxycycline-induced stress (Journal article - 2014)
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2024

Genome dynamics across the evolutionary transition to endosymbiosis.

Siozios, S., Nadal-Jimenez, P., Azagi, T., Sprong, H., Frost, C. L., Parratt, S. R., . . . Hurst, G. D. D. (2024). Genome dynamics across the evolutionary transition to endosymbiosis.. Current biology : CB, S0960-9822(24)01433-7. doi:10.1016/j.cub.2024.10.044

DOI
10.1016/j.cub.2024.10.044
Journal article

Implementing portable, real-time 16S rRNA sequencing in the healthcare sector enhances antimicrobial stewardship

DOI
10.1101/2024.09.23.24314079
Preprint

Cappable-Seq reveals the transcriptional landscape of stress responses in the bacterial endosymbiont<i>Wolbachia</i>

DOI
10.1101/2024.08.15.608088
Preprint

SARS-CoV-2 population dynamics in immunocompetent individuals in a closed transmission chain shows genomic diversity over the course of infection.

Goldswain, H., Penrice-Randal, R., Donovan-Banfield, I., Duffy, C. W., Dong, X., Randle, N., . . . Emmett, S. R. (2024). SARS-CoV-2 population dynamics in immunocompetent individuals in a closed transmission chain shows genomic diversity over the course of infection.. Genome medicine, 16(1), 89. doi:10.1186/s13073-024-01360-1

DOI
10.1186/s13073-024-01360-1
Journal article

Establishment and partial characterisation of a new cell line derived from adult tissues of the tsetse fly Glossina morsitans morsitans.

Bell-Sakyi, L., Haines, L. R., Petrucci, G., Beliavskaia, A., Hartley, C., Khoo, J. J., . . . Darby, A. C. (2024). Establishment and partial characterisation of a new cell line derived from adult tissues of the tsetse fly Glossina morsitans morsitans.. Parasites & vectors, 17(1), 231. doi:10.1186/s13071-024-06310-9

DOI
10.1186/s13071-024-06310-9
Journal article

Microbiome and mitogenomics of the chigger mite Pentidionis agamae: potential role as an Orientia vector and associations with divergent clades of Wolbachia and Borrelia

Alkathiry, H. A., Alghamdi, S. Q., Sinha, A., Margos, G., Stekolnikov, A. A., Alagaili, A. N., . . . Khoo, J. J. (2024). Microbiome and mitogenomics of the chigger mite Pentidionis agamae: potential role as an Orientia vector and associations with divergent clades of Wolbachia and Borrelia. BMC Genomics, 25(1). doi:10.1186/s12864-024-10301-6

DOI
10.1186/s12864-024-10301-6
Journal article

Author Correction: Para-infectious brain injury in COVID-19 persists at follow-up despite attenuated cytokine and autoantibody responses.

Michael, B. D., Dunai, C., Needham, E. J., Tharmaratnam, K., Williams, R., Huang, Y., . . . Menon, D. K. (2024). Author Correction: Para-infectious brain injury in COVID-19 persists at follow-up despite attenuated cytokine and autoantibody responses.. Nature communications, 15(1), 2918. doi:10.1038/s41467-024-47320-6

DOI
10.1038/s41467-024-47320-6
Journal article

Microbiome and mitogenomics of the chigger mite Pentidionis agamae: Potential role as an Orientia vector and associations with divergent clades of Wolbachia and Borrelia

DOI
10.21203/rs.3.rs-3837555/v1
Preprint

Thoughts and perspectives of metagenome sequencing as a diagnostic tool for infectious disease: an interpretive phenomenological study

DOI
10.1101/2024.01.02.24300703
Preprint

COVID-19 risk-mitigation in reopening mass cultural events: population-based observational study for the UK Events Research Programme in Liverpool City Region

Burnside, G., Cheyne, C. P., Leeming, G., Humann, M., Darby, A., Green, M. A., . . . Buchan, I. E. (2024). COVID-19 risk-mitigation in reopening mass cultural events: population-based observational study for the UK Events Research Programme in Liverpool City Region. Journal of the Royal Society of Medicine. doi:10.1177/01410768231182389

DOI
10.1177/01410768231182389
Journal article

2023

Increased bacterial taxonomic and functional diversity is associated with impaired rotavirus vaccine immunogenicity in infants from India and Malawi.

Cunningham-Oakes, E., Bronowski, C., Chinyama, E., Jere, K. C., Sindhu, K. N. C., Kang, G., . . . Parker, E. P. K. (2023). Increased bacterial taxonomic and functional diversity is associated with impaired rotavirus vaccine immunogenicity in infants from India and Malawi.. BMC microbiology, 23(1), 354. doi:10.1186/s12866-023-03098-z

DOI
10.1186/s12866-023-03098-z
Journal article

Association between maternal breastmilk microbiota composition and rotavirus vaccine response in African, Asian, and European infants: a prospective cohort study

Mandolo, J., Parker, E. P. K., Bronowski, C., Sindhu, K. N. C., Darby, A. C., Cunliffe, N. A., . . . Verghese, V. P. (n.d.). Association between maternal breastmilk microbiota composition and rotavirus vaccine response in African, Asian, and European infants: a prospective cohort study. The Journal of Infectious Diseases. doi:10.1093/infdis/jiad234

DOI
10.1093/infdis/jiad234
Journal article

<i>Arsenophonus</i>symbiosis with louse flies: multiple origins, coevolutionary dynamics, and metabolic significance

DOI
10.1101/2023.07.13.548870
Preprint

Metagenomics of culture isolates and insect tissue illuminate the evolution of <i>Wolbachia</i>, <i>Rickettsia</i> and <i>Bartonella</i> symbionts in <i>Ctenocephalides</i> spp. fleas.

Beliavskaia, A., Tan, K. -K., Sinha, A., Husin, N. A., Lim, F. S., Loong, S. K., . . . Khoo, J. J. (2023). Metagenomics of culture isolates and insect tissue illuminate the evolution of <i>Wolbachia</i>, <i>Rickettsia</i> and <i>Bartonella</i> symbionts in <i>Ctenocephalides</i> spp. fleas.. Microbial genomics, 9(7). doi:10.1099/mgen.0.001045

DOI
10.1099/mgen.0.001045
Journal article

The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis.

Pascall, D. J., Vink, E., Blacow, R., Bulteel, N., Campbell, A., Campbell, R., . . . COVID-19 Genomics UK (COG-UK) Consortium. (2023). The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis.. PloS one, 18(4), e0284187. doi:10.1371/journal.pone.0284187

DOI
10.1371/journal.pone.0284187
Journal article

Enhancing Infectious Intestinal Disease diagnosis through metagenomic and metatranscriptomic sequencing of over 1000 human diarrhoeal samples

DOI
10.1101/2023.04.03.23288067
Preprint

Increased bacterial taxonomic and functional diversity is associated with impaired rotavirus vaccine immunogenicity in infants from India and Malawi

DOI
10.1101/2023.03.24.23287614
Preprint

Evaluating the cost implications of integrating SARS-CoV-2 genome sequencing for infection prevention and control investigation of nosocomial transmission within hospitals

Panca, M., Blackstone, J., Stirrup, O., Cutino-Moguel, M. -T., Thomson, E., Peters, C., . . . Breuer, J. (2023). Evaluating the cost implications of integrating SARS-CoV-2 genome sequencing for infection prevention and control investigation of nosocomial transmission within hospitals. JOURNAL OF HOSPITAL INFECTION, 139, 23-32. doi:10.1016/j.jhin.2023.06.005

DOI
10.1016/j.jhin.2023.06.005
Journal article

Timing and delivery route effects of cecal microbiome transplants on <i>Salmonella </i>Typhimurium infections in chickens: potential for in-hatchery delivery of microbial interventions

Pottenger, S., Watts, A., Wedley, A., Jopson, S., Darby, A. C., & Wigley, P. (2023). Timing and delivery route effects of cecal microbiome transplants on <i>Salmonella </i>Typhimurium infections in chickens: potential for in-hatchery delivery of microbial interventions. ANIMAL MICROBIOME, 5(1). doi:10.1186/s42523-023-00232-0

DOI
10.1186/s42523-023-00232-0
Journal article

2022

Genomic Analysis of Two Phlebotomine Sand Fly Vectors of<i>Leishmania</i>from the New and Old World

DOI
10.1101/2022.10.05.510924
Preprint

Recovering individual haplotypes and a contiguous genome assembly from pooled long-read sequencing of the diamondback moth (Lepidoptera: Plutellidae)

Whiteford, S., Van't Hof, A. E., Krishna, R., Marubbi, T., Widdison, S., Saccheri, I. J., . . . Darby, A. C. (2022). Recovering individual haplotypes and a contiguous genome assembly from pooled long-read sequencing of the diamondback moth (Lepidoptera: Plutellidae). G3-GENES GENOMES GENETICS, 12(10). doi:10.1093/g3journal/jkac210

DOI
10.1093/g3journal/jkac210
Journal article

SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

Eales, O., Page, A. J., de Oliveira Martins, L., Wang, H., Bodinier, B., Haw, D., . . . Elliott, P. (2022). SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2. BMC Infectious Diseases, 22(1). doi:10.1186/s12879-022-07628-4

DOI
10.1186/s12879-022-07628-4
Journal article

Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers

Dong, X., Penrice-Randal, R., Goldswain, H., Prince, T., Randle, N., Donovan-Banfield, I., . . . Hiscox, J. A. (2022). Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers. GIGASCIENCE, 11. doi:10.1093/gigascience/giac045

DOI
10.1093/gigascience/giac045
Journal article

The bovine foot skin microbiota is associated with host genotype and the development of infectious digital dermatitis lesions

DOI
10.21203/rs.3.rs-650860/v2
Preprint

Evaluating the effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control teams: the COG-UK hospital-onset COVID-19 infection study

DOI
10.1101/2022.02.10.22270799
Preprint

Combined epidemiological and genomic analysis of nosocomial SARS-CoV-2 infection early in the pandemic and the role of unidentified cases in transmission

Snell, L. B., Fisher, C. L., Taj, U., Stirrup, O., Merrick, B., Alcolea-Medina, A., . . . Awan, A. R. (2022). Combined epidemiological and genomic analysis of nosocomial SARS-CoV-2 infection early in the pandemic and the role of unidentified cases in transmission. Clinical Microbiology and Infection, 28(1), 93-100. doi:10.1016/j.cmi.2021.07.040

DOI
10.1016/j.cmi.2021.07.040
Journal article

2021

Impact of maternal antibodies and microbiota development on the immunogenicity of oral rotavirus vaccine in African, Indian, and European infants

Parker, E. P. K., Bronowski, C., Sindhu, K. N. C., Babji, S., Benny, B., Carmona-Vicente, N., . . . Iturriza-Gomara, M. (2021). Impact of maternal antibodies and microbiota development on the immunogenicity of oral rotavirus vaccine in African, Indian, and European infants. NATURE COMMUNICATIONS, 12(1). doi:10.1038/s41467-021-27074-1

DOI
10.1038/s41467-021-27074-1
Journal article

Genomic epidemiology and the role of international and regional travel in the SARS-CoV-2 epidemic in Zimbabwe: a retrospective study of routinely collected surveillance data.

Mashe, T., Takawira, F. T., de Oliveira Martins, L., Gudza-Mugabe, M., Chirenda, J., Munyanyi, M., . . . SARS-CoV-2 Research Group. (2021). Genomic epidemiology and the role of international and regional travel in the SARS-CoV-2 epidemic in Zimbabwe: a retrospective study of routinely collected surveillance data.. The Lancet. Global health, 9(12), e1658-e1666. doi:10.1016/s2214-109x(21)00434-4

DOI
10.1016/s2214-109x(21)00434-4
Journal article

Vaginal bacterial load in the second trimester is associated with early preterm birth recurrence: a nested case-control study

Goodfellow, L., Verwijs, M. C., Care, A., Sharp, A., Ivandic, J., Poljak, B., . . . van de Wijgert, J. H. H. M. (2021). Vaginal bacterial load in the second trimester is associated with early preterm birth recurrence: a nested case-control study. BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY, 128(13), 2061-2072. doi:10.1111/1471-0528.16816

DOI
10.1111/1471-0528.16816
Journal article

Defining the analytical and clinical sensitivity of the ARTIC method for the detection of SARS-CoV-2

DOI
10.1101/2021.10.09.21264695
Preprint

Large-scale comparative genomics unravels great genomic diversity across the <i>Rickettsia</i> and <i>Ca</i>. Megaira genera and identifies Torix group as an evolutionarily distinct clade

DOI
10.1101/2021.10.06.463315
Preprint

SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study

Stirrup, O., Boshier, F., Venturini, C., Guerra-Assunção, J. A., Alcolea-Medina, A., Beckett, A., . . . Breuer, J. (2021). SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study. BMJ Open Respiratory Research, 8(1), e001029. doi:10.1136/bmjresp-2021-001029

DOI
10.1136/bmjresp-2021-001029
Journal article

Nosocomial or not? A combined epidemiological and genomic investigation to understand hospital-acquired COVID-19 infection on an elderly care ward.

Wenlock, R. D., Tausan, M., Mann, R., Garr, W., Preston, R., Arnold, A., . . . Sargent, C. (2021). Nosocomial or not? A combined epidemiological and genomic investigation to understand hospital-acquired COVID-19 infection on an elderly care ward.. Infection prevention in practice, 3(3), 100165. doi:10.1016/j.infpip.2021.100165

DOI
10.1016/j.infpip.2021.100165
Journal article

Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study.

Twohig, K. A., Nyberg, T., Zaidi, A., Thelwall, S., Sinnathamby, M. A., Aliabadi, S., . . . COVID-19 Genomics UK (COG-UK) consortium. (2021). Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study.. The Lancet. Infectious diseases, 22(1), 35-42. doi:10.1016/s1473-3099(21)00475-8

DOI
10.1016/s1473-3099(21)00475-8
Journal article

The Bovine Foot Skin Microbiota is Associated with Host Genotype and the Development of Infectious Digital Dermatitis Lesions

DOI
10.21203/rs.3.rs-650860/v1
Preprint

Retrospective screening of routine respiratory samples revealed undetected community transmission and missed intervention opportunities for SARS-CoV-2 in the United Kingdom

Chappell, J. G., Tsoleridis, T., Clark, G., Berry, L., Holmes, N., Moore, C., . . . McClure, C. P. (2021). Retrospective screening of routine respiratory samples revealed undetected community transmission and missed intervention opportunities for SARS-CoV-2 in the United Kingdom. Journal of General Virology, 102(6). doi:10.1099/jgv.0.001595

DOI
10.1099/jgv.0.001595
Journal article

A gene expression panel for estimating age in males and females of the sleeping sickness vector <i>Glossina morsitans</i>

DOI
10.1101/2021.05.12.443792
Preprint

Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England

Volz, E., Mishra, S., Chand, M., Barrett, J. C., Johnson, R., Geidelberg, L., . . . Ferguson, N. M. (2021). Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England. NATURE, 593(7858), 266-+. doi:10.1038/s41586-021-03470-x

DOI
10.1038/s41586-021-03470-x
Journal article

Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

Collier, D. A., De Marco, A., Ferreira, I. A. T. M., Meng, B., Datir, R. P., Walls, A. C., . . . Gupta, R. K. (2021). Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies. NATURE, 593(7857), 136-+. doi:10.1038/s41586-021-03412-7

DOI
10.1038/s41586-021-03412-7
Journal article

Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 variant of concern 202012/01 (B.1.1.7): an exploratory analysis of a randomised controlled trial

Emary, K. R. W., Golubchik, T., Aley, P. K., Ariani, C. V., Angus, B., Bibi, S., . . . Grp, O. C. V. T. (2021). Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 variant of concern 202012/01 (B.1.1.7): an exploratory analysis of a randomised controlled trial. LANCET, 397(10282), 1351-1362. doi:10.1016/S0140-6736(21)00628-0

DOI
10.1016/S0140-6736(21)00628-0
Journal article

Advanced Plaque Biofilm Modelling with Constant Depth Film Fermentation

Softley, R., Slomaka, V., Higham, S., Darby, A., & Valappil, S. (2021). Advanced Plaque Biofilm Modelling with Constant Depth Film Fermentation. In OMIG Prize meeting 2021.

Conference Paper

Covid-19: variants and vaccination

Darby, A. C., & Hiscox, J. A. (2021). Covid-19: variants and vaccination. BMJ-BRITISH MEDICAL JOURNAL, 372. doi:10.1136/bmj.n771

DOI
10.1136/bmj.n771
Journal article

Identification and quantification of SARS-CoV-2 leader subgenomic mRNA gene junctions in nasopharyngeal samples shows phasic transcription in animal models of COVID-19 and dysregulation at later time points that can also be identified in humans

Dong, X., Penrice-Randal, R., Goldswain, H., Prince, T., Randle, N., Salguero, J., . . . Hiscox, J. (2021). Identification and quantification of SARS-CoV-2 leader subgenomic mRNA gene junctions in nasopharyngeal samples shows phasic transcription in animal models of COVID-19 and dysregulation at later time points that can also be identified in humans. doi:10.1101/2021.03.03.433753

DOI
10.1101/2021.03.03.433753
Journal article

CAPPABLE-SEQ REVEALS PROLIFIC NON-CANONICAL TRANSCRIPTION START SITES IN WOLBACHIA STRAINS WMELPOP-CLA AND WALBB UNDER STRESS CONDITIONS

Suliman, Y., Li, Z., Sinha, A., Dyer, P. D., Hartley, C. S., Ettwiller, L., . . . Makepeace, B. L. (2021). CAPPABLE-SEQ REVEALS PROLIFIC NON-CANONICAL TRANSCRIPTION START SITES IN WOLBACHIA STRAINS WMELPOP-CLA AND WALBB UNDER STRESS CONDITIONS. In AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE Vol. 105 (pp. 153). Retrieved from https://www.webofscience.com/

Conference Paper

CULTURE-DEPENDENT AND -INDEPENDENT METAGENOMIC ASSEMBLIES FROM MALAYSIAN CTENOCEPHALIDES SPP. FLEAS UNCOVER NEW COMPLETE GENOMES FOR BARTONELLA CLARRIDGEIAE, RICKETTSIA ASEMBONENSIS AND MULTIPLE CLADES OF WOLBACHIA

Beliavskaia, A., Khoo, J. J., Tan, K. -K., Sinha, A., Loong, S. -K., Carlow, C. K., . . . Makepeace, B. L. (2021). CULTURE-DEPENDENT AND -INDEPENDENT METAGENOMIC ASSEMBLIES FROM MALAYSIAN CTENOCEPHALIDES SPP. FLEAS UNCOVER NEW COMPLETE GENOMES FOR BARTONELLA CLARRIDGEIAE, RICKETTSIA ASEMBONENSIS AND MULTIPLE CLADES OF WOLBACHIA. In AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE Vol. 105 (pp. 174). Retrieved from https://www.webofscience.com/

Conference Paper

Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and RNA Level.

Leary, S., Gaudieri, S., Parker, M. D., Chopra, A., James, I., Pakala, S., . . . Mallal, S. (2021). Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and RNA Level.. Pathogens & immunity, 6(2), 27-49. doi:10.20411/pai.v6i2.460

DOI
10.20411/pai.v6i2.460
Journal article

Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.

da Silva Filipe, A., Shepherd, J. G., Williams, T., Hughes, J., Aranday-Cortes, E., Asamaphan, P., . . . Thomson, E. C. (2021). Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.. Nature microbiology, 6(1), 112-122. doi:10.1038/s41564-020-00838-z

DOI
10.1038/s41564-020-00838-z
Journal article

2020

Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa

Pulford, C., Perez-Sepulveda, B. M., Canals, R., Bevington, J. A., Bengtsson, R. J., Wenner, N., . . . Hinton, J. (2020). Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa. Nature Microbiology. doi:10.1038/s41564-020-00836-1

DOI
10.1038/s41564-020-00836-1
Journal article

16282 Community relationships in the dry skin microbiome

Arnold, D., Cawley, A., Darby, A. C., Falciani, F., Grimshaw, S. G., Hawkins, S. S., . . . Paterson, S. (2020). 16282 Community relationships in the dry skin microbiome. Journal of the American Academy of Dermatology, 83(6), AB59. doi:10.1016/j.jaad.2020.06.322

DOI
10.1016/j.jaad.2020.06.322
Journal article

Impact of maternal antibodies and microbiota development on the immunogenicity of oral rotavirus vaccine in African, Indian, and European infants: a prospective cohort study

Parker, E., Bronowski, C., Sindhu, K. N., Babji, S., Benny, B., Carmona-Vicente, N., . . . Iturriza-Gómara, M. (2020). Impact of maternal antibodies and microbiota development on the immunogenicity of oral rotavirus vaccine in African, Indian, and European infants: a prospective cohort study. doi:10.1101/2020.11.02.20224576

DOI
10.1101/2020.11.02.20224576
Journal article

Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism

Moore, S. C., Penrice-Randal, R., Alruwaili, M., Randle, N., Armstrong, S., Hartley, C., . . . Hiscox, J. A. (2020). Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism. VIRUSES-BASEL, 12(10). doi:10.3390/v12101164

DOI
10.3390/v12101164
Journal article

Increased risk of SARS-CoV-2 infection in staff working across different care homes enchanced CoVID-19 outbreak investigations in London care Homes

Ladhani, S. N., Chow, J. Y., Janarthanan, R., Fok, J., Crawley-Boevey, E., Vusirikala, A., . . . Ramsay, M. E. (2020). Increased risk of SARS-CoV-2 infection in staff working across different care homes enchanced CoVID-19 outbreak investigations in London care Homes. Journal of Infection. doi:10.1016/j.jinf.2020.07.027

DOI
10.1016/j.jinf.2020.07.027
Journal article

AcGI1, a novel genomic island carrying antibiotic resistance integron In687 in multidrug resistant <i>Achromobacter xylosoxidans</i> in a teaching hospital in Thailand

Pongchaikul, P., Santanirand, P., Antonyuk, S., Winstanley, C., & Darby, A. C. (2020). AcGI1, a novel genomic island carrying antibiotic resistance integron In687 in multidrug resistant <i>Achromobacter xylosoxidans</i> in a teaching hospital in Thailand. FEMS MICROBIOLOGY LETTERS, 367(14). doi:10.1093/femsle/fnaa109

DOI
10.1093/femsle/fnaa109
Journal article

Isolation and Propagation of Laboratory Strains and a Novel Flea-Derived Field Strain of Wolbachia in Tick Cell Lines

Khoo, J. J., Kurtti, T., Husin, N. A., Beliavskaia, A., Lim, F. S., Zulkifli, M. M. S., . . . Bell-Sakyi, L. (2020). Isolation and Propagation of Laboratory Strains and a Novel Flea-Derived Field Strain of Wolbachia in Tick Cell Lines. Microorganisms, 8(7). doi:10.3390/microorganisms8070988

DOI
10.3390/microorganisms8070988
Journal article

Diminutive, degraded but dissimilar:<i>Wolbachia</i>genomes from filarial nematodes do not conform to a single paradigm

DOI
10.1101/2020.06.18.160200
Preprint

Insect—symbiont gene expression in the midgut bacteriocytes of a blood-sucking parasite

Husnik, F., Hypsa, V., & Darby, A. (2020). Insect-Symbiont Gene Expression in the Midgut Bacteriocytes of a Blood-Sucking Parasite.. Genome biology and evolution, 12(4), 429-442. doi:10.1093/gbe/evaa032

DOI
10.1101/572495
Journal article

The Hypercomplex Genome of an Insect Reproductive Parasite Highlights the Importance of Lateral Gene Transfer in Symbiont Biology

Frost, C. L., Siozios, S., Nadal-Jimenez, P., Brockhurst, M. A., King, K. C., Darby, A. C., & Hurst, G. D. D. (2020). The Hypercomplex Genome of an Insect Reproductive Parasite Highlights the Importance of Lateral Gene Transfer in Symbiont Biology. mBio, 11(2). doi:10.1128/mbio.02590-19

DOI
10.1128/mbio.02590-19
Journal article

Intermittent Lactobacilli-containing Vaginal Probiotic or Metronidazole Use to Prevent Bacterial Vaginosis Recurrence: A Pilot Study Incorporating Microscopy and Sequencing

van de Wijgert, J. H. H. M., Verwijs, M. C., Agaba, S. K., Bronowski, C., Mwambarangwe, L., Uwineza, M., . . . Darby, A. C. (2020). Intermittent Lactobacilli-containing Vaginal Probiotic or Metronidazole Use to Prevent Bacterial Vaginosis Recurrence: A Pilot Study Incorporating Microscopy and Sequencing. Scientific Reports, 10(1). doi:10.1038/s41598-020-60671-6

DOI
10.1038/s41598-020-60671-6
Journal article

Intermittent Lactobacilli-containing Vaginal Probiotic or Metronidazole Use to Prevent Bacterial Vaginosis Recurrence: Safety and Preliminary Efficacy by Microscopy and Sequencing

van de Wijgert, J., Verwijs, M., Agaba, S., Bronowski, C., Mwambarangwe, L., Uwineza, M., . . . Darby, A. (2020). Intermittent Lactobacilli-containing Vaginal Probiotic or Metronidazole Use to Prevent Bacterial Vaginosis Recurrence: Safety and Preliminary Efficacy by Microscopy and Sequencing. Scientific Reports. doi:10.1038/s41598-020-60671-6

DOI
10.1038/s41598-020-60671-6
Journal article

Characterization of Circulating Clostridium difficile Strains, Host Response and Intestinal Microbiome in Hospitalized Children With Diarrhea

Lees, E. A., Carrol, E. D., Ellaby, N. A. F., Roberts, P., Corless, C. E., Lenzi, L., . . . Pirmohamed, M. (2020). Characterization of Circulating Clostridium difficile Strains, Host Response and Intestinal Microbiome in Hospitalized Children With Diarrhea. The Pediatric infectious disease journal, 39(3), 221-228. doi:10.1097/inf.0000000000002559

DOI
10.1097/inf.0000000000002559
Journal article

Community relationships in the dry skin microbiome

Arnold, D., Cawley, A., Darby, A. C., Falciani, F., Grimshaw, S. G., Hawkins, S. S., . . . Paterson, S. (2020). Community relationships in the dry skin microbiome. In JOURNAL OF THE AMERICAN ACADEMY OF DERMATOLOGY Vol. 83 (pp. AB59). Retrieved from https://www.webofscience.com/

Conference Paper

2019

Recovering individual haplotypes and a contiguous genome assembly from pooled long read sequencing of the diamondback moth (Lepidoptera: Plutellidae)

DOI
10.1101/867879
Preprint

Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand

Chaisiri, K., Gill, A. C., Stekolnikov, A. A., Hinjoy, S., McGarry, J. W., Darby, A. C., . . . Makepeace, B. (2019). Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand. Animal Microbiome, 1. doi:10.1186/s42523-019-0019-x

DOI
10.1186/s42523-019-0019-x
Journal article

The Tick Cell Biobank: new arthropod cell lines for arbovirus research

Bell-Sakyi, L., Hartley, C., Darby, A., Baylis, M., & Makepeace, B. (2019). The Tick Cell Biobank: new arthropod cell lines for arbovirus research. Access Microbiology, 1(10). doi:10.1099/acmi.imav2019.po0045

DOI
10.1099/acmi.imav2019.po0045
Journal article

The draft genome of strain cCpun from biting midges establishes Cardinium as a paraphyletic group, and reveals a novel gene family expansion in a symbiont

Siozios, S., Pilgrim, J., Darby, A. C., Baylis, M., & Hurst, G. D. D. (2019). The draft genome of strain cCpun from biting midges establishes Cardinium as a paraphyletic group, and reveals a novel gene family expansion in a symbiont. PeerJ. doi:10.7287/peerj.preprints.27242v1

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10.7287/peerj.preprints.27242v1
Journal article

Aquatic Hemiptera in Southwest Cameroon: Biodiversity of Potential Reservoirs of &lt;em&gt;Mycobacterium ulcerans&lt;/em&gt; and Multiple &lt;em&gt;Wolbachia&lt;/em&gt; Sequence Types Revealed by Metagenomics

DOI
10.20944/preprints201908.0031.v1
Preprint

METABOLOMICS & MULTI-OMICS ANALYSIS OF CROHN'S DISEASE

Frau, A., Hough, R., Ijaz, U., Campbell, B., Kenny, J., Hall, N., . . . Probert, C. (2019). METABOLOMICS & MULTI-OMICS ANALYSIS OF CROHN'S DISEASE. In GUT Vol. 68 (pp. A68). doi:10.1136/gutjnl-2019-BSGAbstracts.131

DOI
10.1136/gutjnl-2019-BSGAbstracts.131
Conference Paper

The Sodalis system and flux balance analysis as a tool for investigating insect-microbe interactions and the evolution of symbioses

Hall, R., Flanagan, L., Bottery, M., Springthorpe, V., Thorpe, S., Darby, A., . . . Thomas, G. (2019). The Sodalis system and flux balance analysis as a tool for investigating insect-microbe interactions and the evolution of symbioses. Access Microbiology, 1(1A). doi:10.1099/acmi.ac2019.po0057

DOI
10.1099/acmi.ac2019.po0057
Journal article

Multi-omics analysis suggests an active role of fungi in Crohn's disease

Frau, A., Ijaz, U. Z., Hough, R., Campbell, B. J., Kenny, J. G., Hall, N., . . . Probert, C. S. J. (2019). Multi-omics analysis suggests an active role of fungi in Crohn's disease. In JOURNAL OF CROHNS & COLITIS Vol. 13 (pp. S545). doi:10.1093/ecco-jcc/jjy222.966

DOI
10.1093/ecco-jcc/jjy222.966
Conference Paper

Honey bee trypanosomatid parasite dynamically changes the transcriptome during the infection of honey bee and modifies the host physiology

DOI
10.1101/529321
Preprint

Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand

DOI
10.1101/523845
Preprint

<i>AMBLYOMMA VARIEGATUM</i>, VECTOR OF AFRICAN TICK-BITE FEVER, CONTAINS AN INTEGRATED <i>RICKETTSIA AFRICAE</i> CHROMOSOME IN ITS NUCLEAR GENOME

Darby, A. C., Al-Khafaji, A. M., Whitehead, M., Hartley, C. S., Robinson, G., Armstrong, S. D., . . . Makepeace, B. (2019). <i>AMBLYOMMA VARIEGATUM</i>, VECTOR OF AFRICAN TICK-BITE FEVER, CONTAINS AN INTEGRATED <i>RICKETTSIA AFRICAE</i> CHROMOSOME IN ITS NUCLEAR GENOME. In AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE Vol. 101 (pp. 211). Retrieved from https://www.webofscience.com/

Conference Paper

Aquatic Hemiptera in Southwest Cameroon: Biodiversity of Potential Reservoirs of <i>Mycobacterium ulcerans</i> and Multiple <i>Wolbachia</i> Sequence Types Revealed by Metagenomics

Esemu, S. N., Dong, X., Kfusi, A. J., Hartley, C. S., Ndip, R. N., Ndip, L. M., . . . Makepeace, B. L. (2019). Aquatic Hemiptera in Southwest Cameroon: Biodiversity of Potential Reservoirs of <i>Mycobacterium ulcerans</i> and Multiple <i>Wolbachia</i> Sequence Types Revealed by Metagenomics. DIVERSITY-BASEL, 11(12). doi:10.3390/d11120225

DOI
10.3390/d11120225
Journal article

IMPACT OF THE GUT MICROBIOTA ON ROTAVIRUS VACCINE RESPONSE IN INDIAN, AFRICAN AND EUROPEAN INFANTS: A PROSPECTIVE COHORT STUDY

Bronowski, C., Parker, E. P. K., Sindhu, K. N. C., Praharaj, I., Babji, S., Chinyama, E., . . . Iturriza-Gomara, M. (2019). IMPACT OF THE GUT MICROBIOTA ON ROTAVIRUS VACCINE RESPONSE IN INDIAN, AFRICAN AND EUROPEAN INFANTS: A PROSPECTIVE COHORT STUDY. In TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE Vol. 113 (pp. S65-S66). Retrieved from https://www.webofscience.com/

Conference Paper

METAGENOMICS OF CAMEROONIAN AQUATIC BUGS ASSOCIATED WITH COLONISATION BY <i>MYCOBACTERIUM</i> <i>ULCERNS</i> REVEALS <i>WOLBACHIA</i> INFECTIONS

Esemu, S. N., Dong, X., Post, R. J., Ndip, L. M., Darby, A. C., & Makepeace, B. L. (2019). METAGENOMICS OF CAMEROONIAN AQUATIC BUGS ASSOCIATED WITH COLONISATION BY <i>MYCOBACTERIUM</i> <i>ULCERNS</i> REVEALS <i>WOLBACHIA</i> INFECTIONS. In TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE Vol. 113 (pp. S256-S257). Retrieved from https://www.webofscience.com/

Conference Paper

Multi-locus sequence typing of <i>Ixodes ricinus</i> and its symbiont <i>Candidatus</i> Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland

Al-Khafaji, A. M., Clegg, S. R., Pinder, A. C., Luu, L., Hansford, K. M., Seelig, F., . . . Makepeace, B. L. (2019). Multi-locus sequence typing of <i>Ixodes ricinus</i> and its symbiont <i>Candidatus</i> Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland. TICKS AND TICK-BORNE DISEASES, 10(1), 52-62. doi:10.1016/j.ttbdis.2018.08.016

DOI
10.1016/j.ttbdis.2018.08.016
Journal article

THE VECTOR BIOLOGY OF ECTOPARASITES ON RODENT FROM THE ASIR REGION OF SAUDI ARABIA

Alghamdi, S. Q., Alagaili, A. N., Stekolnikov, A. A., McGarry, J. W., Darby, A. C., & Makepeace, B. L. (2019). THE VECTOR BIOLOGY OF ECTOPARASITES ON RODENT FROM THE ASIR REGION OF SAUDI ARABIA. In TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE Vol. 113 (pp. S100). Retrieved from https://www.webofscience.com/

Conference Paper

The draft genome of strain <i>c</i>Cpun from biting midges confirms insect <i>Cardinium</i> are not a monophyletic group and reveals a novel gene family expansion in a symbiont

Siozios, S., Pilgrim, J., Darby, A. C., Baylis, M., & Hurst, G. D. D. (2019). The draft genome of strain <i>c</i>Cpun from biting midges confirms insect <i>Cardinium</i> are not a monophyletic group and reveals a novel gene family expansion in a symbiont. PEERJ, 7. doi:10.7717/peerj.6448

DOI
10.7717/peerj.6448
Journal article

2018

The sequence of a male-specific genome region containing the sex determination switch in Aedes aegypti

Turner, J., Krishna, R., Van 't Hof, A., Sutton, E., Matzen, K., & Darby, A. (2018). The sequence of a male-specific genome region containing the sex determination switch in Aedes aegypti. Parasites and Vectors. doi:10.1186/s13071-018-3090-3

DOI
10.1186/s13071-018-3090-3
Journal article

BACTERIAL AND FUNGAL COMMUNITIES IN FAECES AND BIOPSIES IN IBD

Frau, A., Ijaz, U. Z., Campbell, B., Darby, A., Kenny, J., Hall, N., & Probert, C. (2018). BACTERIAL AND FUNGAL COMMUNITIES IN FAECES AND BIOPSIES IN IBD. In GUT Vol. 67 (pp. A58-A59). doi:10.1136/gutjnl-2018-BSGAbstracts.115

DOI
10.1136/gutjnl-2018-BSGAbstracts.115
Conference Paper

Comparative Genomics of <i>Staphylococcus</i> Reveals Determinants of Speciation and Diversification of Antimicrobial Defense

DOI
10.1101/277400
Preprint

Crohn's disease is characterised by a fungal dysbiosis

Frau, A., Jonkers, D., Penders, J., Pierik, M., Ijaz, U. Z., Campbell, B., . . . Probert, C. (2018). Crohn's disease is characterised by a fungal dysbiosis. In JOURNAL OF CROHNS & COLITIS Vol. 12 (pp. S550-S551). Retrieved from https://www.webofscience.com/

Conference Paper

MULTI-LOCUS SEQUENCE TYPING OF THE SHEEP TICK <it>IXODES RICINUS</it> AND ITS SYMBIONT <it>CANDIDATUS</it> MIDICHLORIA MITOCHONDRII ACROSS EUROPE REVEALS EVIDENCE OF LOCAL COEVOLUTION IN SCOTLAND

Al-Khafaji, A., Clegg, S., Pinder, A., Hansford, K., Seelig, F., Dinnis, R., . . . Makepeace, B. (2018). MULTI-LOCUS SEQUENCE TYPING OF THE SHEEP TICK <it>IXODES RICINUS</it> AND ITS SYMBIONT <it>CANDIDATUS</it> MIDICHLORIA MITOCHONDRII ACROSS EUROPE REVEALS EVIDENCE OF LOCAL COEVOLUTION IN SCOTLAND. In AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE Vol. 99 (pp. 481). Retrieved from https://www.webofscience.com/

Conference Paper

2017

Optimised conditions for handling and transport of male Anopheles arabiensis : effects of low temperature, compaction, and ventilation on male quality

Culbert, N. J., Lees, R. S., Vreysen, M. J. B., Darby, A. C., & Gilles, J. R. L. (2017). Optimised conditions for handling and transport of male <i>Anopheles arabiensis</i>: effects of low temperature, compaction, and ventilation on male quality. ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA, 164(3), 276-283. doi:10.1111/eea.12610

DOI
10.1111/eea.12610
Journal article

Transcriptome sequencing of human breast cancer reveals aberrant intronic transcription in amplicons and dysregulation of alternative splicing with major therapeutic implications (vol 48, pg 130, 2016)

Forootan, S. S., Butler, J. M., Gardener, D., Jones, D., Baird, A. E., Dodson, A., . . . Gosden, C. M. (2017). Transcriptome sequencing of human breast cancer reveals aberrant intronic transcription in amplicons and dysregulation of alternative splicing with major therapeutic implications (vol 48, pg 130, 2016). INTERNATIONAL JOURNAL OF ONCOLOGY, 51(3), 997. doi:10.3892/ijo.2017.4087

DOI
10.3892/ijo.2017.4087
Journal article

Large scale and significant expression from pseudogenes in <i>Sodalis glossinidius</i> - a facultative bacterial endosymbiont

DOI
10.1101/124388
Preprint

Challenging the <i>Wigglesworthia</i>, <i>Sodalis</i>, <i>Wolbachia</i> symbiosis dogma in tsetse flies: <i>Spiroplasma</i> is present in both laboratory and natural populations

Doudoumis, V., Blow, F., Saridaki, A., Augustinos, A., Dyer, N. A., Goodhead, I., . . . Tsiamis, G. (2017). Challenging the <i>Wigglesworthia</i>, <i>Sodalis</i>, <i>Wolbachia</i> symbiosis dogma in tsetse flies: <i>Spiroplasma</i> is present in both laboratory and natural populations. SCIENTIFIC REPORTS, 7. doi:10.1038/s41598-017-04740-3

DOI
10.1038/s41598-017-04740-3
Journal article

Impact of maternal antibodies and infant gut microbiota on the immunogenicity of rotavirus vaccines in African, Indian and European infants: protocol for a prospective cohort study

Sindhu, K. N. C., Cunliffe, N., Peak, M., Turner, M., Darby, A., Grassly, N., . . . Kang, G. (2017). Impact of maternal antibodies and infant gut microbiota on the immunogenicity of rotavirus vaccines in African, Indian and European infants: protocol for a prospective cohort study. BMJ OPEN, 7(3). doi:10.1136/bmjopen-2017-016577

DOI
10.1136/bmjopen-2017-016577
Journal article

GENOMES OF TROMBIDIOID MITES UNCOVER ADAPTATIONS TO PARASITISM IN THE SCRUB TYPHUS VECTOR, <i>LEPTOTROMBIDIUM DELIENSE</i>

Dong, X., Chaisiri, K., Donnelly, M. J., McGarry, J. W., Kadowaki, T., Darby, A. C., & Makepeace, B. L. (2017). GENOMES OF TROMBIDIOID MITES UNCOVER ADAPTATIONS TO PARASITISM IN THE SCRUB TYPHUS VECTOR, <i>LEPTOTROMBIDIUM DELIENSE</i>. In AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE Vol. 97 (pp. 5). Retrieved from https://www.webofscience.com/

Conference Paper

GLOBAL TRANSCRIPTOME ANALYSIS OF <i>WOLBACHIA</i> STRAIN <i>W</i>OO UNDER ANTIBIOTIC PRESSURE IN <i>VIVO</i>

Bah, G. S., Xia, D., Krishna, R., Tanya, V. N., Darby, A. C., & Makepeace, B. (2017). GLOBAL TRANSCRIPTOME ANALYSIS OF <i>WOLBACHIA</i> STRAIN <i>W</i>OO UNDER ANTIBIOTIC PRESSURE IN <i>VIVO</i>. In AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE Vol. 97 (pp. 202-203). Retrieved from https://www.webofscience.com/

Conference Paper

2016

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

D'Amore, R., Ijaz, U. Z., Schirmer, M., Kenny, J. G., Gregory, R., Darby, A. C., . . . Hall, N. (2016). A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC GENOMICS, 17. doi:10.1186/s12864-015-2194-9

DOI
10.1186/s12864-015-2194-9
Journal article

Transcriptome sequencing of human breast cancer reveals aberrant intronic transcription in amplicons and dysregulation of alternative splicing with major therapeutic implications

Forootan, S. S., Butler, J. M., Gardener, D., Baird, A. E., Dodson, A., Darby, A., . . . Gosden, C. M. (2016). Transcriptome sequencing of human breast cancer reveals aberrant intronic transcription in amplicons and dysregulation of alternative splicing with major therapeutic implications. INTERNATIONAL JOURNAL OF ONCOLOGY, 48(1), 130-144. doi:10.3892/ijo.2015.3222

DOI
10.3892/ijo.2015.3222
Journal article

2015

Supergroup <i>C Wolbachia</i>, mutualist symbionts of filarial nematodes, have a distinct genome structure

Comandatore, F., Cordaux, R., Bandi, C., Blaxter, M., Darby, A., Makepeace, B. L., . . . Sassera, D. (2015). Supergroup <i>C Wolbachia</i>, mutualist symbionts of filarial nematodes, have a distinct genome structure. OPEN BIOLOGY, 5(12). doi:10.1098/rsob.150099

DOI
10.1098/rsob.150099
Journal article

Characterisation of the faecal metabolome and microbiome of Thoroughbred racehorses

Proudman, C. J., Hunter, J. O., Darby, A. C., Escalona, E. E., Batty, C., & Turner, C. (2015). Characterisation of the faecal metabolome and microbiome of Thoroughbred racehorses. EQUINE VETERINARY JOURNAL, 47(5), 580-586. doi:10.1111/evj.12324

DOI
10.1111/evj.12324
Journal article

Understanding Intestinal Microbiota in Equine Grass Sickness: Next Generation Sequencing of Faecal Bacterial <scp>DNA</scp>

Leng, J., Proudman, C., Blow, F., Darby, A., & Swann, J. (2015). Understanding Intestinal Microbiota in Equine Grass Sickness: Next Generation Sequencing of Faecal Bacterial <scp>DNA</scp>. Equine Veterinary Journal, 47(S48), 9. doi:10.1111/evj.12486_19

DOI
10.1111/evj.12486_19
Journal article

Acetogenesis from H-2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist

Ohkuma, M., Noda, S., Hattori, S., Iida, T., Yuki, M., Starns, D., . . . Hongoh, Y. (2015). Acetogenesis from H-2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112(33), 10224-10230. doi:10.1073/pnas.1423979112

DOI
10.1073/pnas.1423979112
Journal article

Bacterial sensing underlies artificial sweetener-induced growth of gut Lactobacillus

Daly, K., Darby, A., Hall, N., Wilkinson, M., Pongchaikul, P., Bravo, D., & Shirazi-Beechey, S. (2015). Bacterial sensing underlies artificial sweetener-induced growth of gut Lactobacillus. Environmental Microbiology, 18(7), 2159-2171. doi:10.1111/1462-2920.12942

DOI
10.1111/1462-2920.12942
Journal article

Complete Genome Sequence of <i>Leptospira interrogans</i> Serovar Bratislava, Strain PigK151

Alt, D. P., Wilson-Welder, J. H., Bayles, D. O., Cameron, C., Adler, B., Bulach, D. M., . . . Zuerner, R. L. (2015). Complete Genome Sequence of <i>Leptospira interrogans</i> Serovar Bratislava, Strain PigK151. GENOME ANNOUNCEMENTS, 3(3). doi:10.1128/genomeA.00678-15

DOI
10.1128/genomeA.00678-15
Journal article

Taking the pseudo out of pseudogenes

Goodhead, I., & Darby, A. C. (2015). Taking the pseudo out of pseudogenes. CURRENT OPINION IN MICROBIOLOGY, 23, 102-109. doi:10.1016/j.mib.2014.11.012

DOI
10.1016/j.mib.2014.11.012
Journal article

2014

The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction

Jackson, A. P., Otto, T. D., Darby, A., Ramaprasad, A., Xia, D., Echaide, I. E., . . . Pain, A. (2014). The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction. Nucleic Acids Research, 42(11), 7113-7131. doi:10.1093/nar/gku322

DOI
10.1093/nar/gku322
Journal article

The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction.

Jackson, A. P., Otto, T. D., Darby, A., Ramaprasad, A., Xia, D., Echaide, I. E., . . . Pain, A. (2014). The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction.. Nucleic Acids Research, 42(11), 7113-7131.

Journal article

Faecal Microbiome of the <scp>T</scp>horoughbred Racehorse and Its Response to Dietary Amylase Supplementation

Proudman, C., Darby, A., & Escalona, E. (2014). Faecal Microbiome of the <scp>T</scp>horoughbred Racehorse and Its Response to Dietary Amylase Supplementation. Equine Veterinary Journal, 46(S46), 35. doi:10.1111/evj.12267_107

DOI
10.1111/evj.12267_107
Journal article

Genome sequence of the tsetse fly (Glossina morsitans): vector of African trypanosomiasis.

International, G. G. I., Attardo, G. M., Abila, P. P., Auma, J. E., Baumann, A. A., Benoit, J. B., . . . al, E. (2014). Genome sequence of the tsetse fly (Glossina morsitans): vector of African trypanosomiasis.. Science, 344(6182), 380-386. doi:10.1126/science.1249656

DOI
10.1126/science.1249656
Journal article

Compartive genomics of <i>Entrococcus faecium</i>

Shami, A., Horsburgh, M. J., & Darby, A. (2014). Compartive genomics of <i>Entrococcus faecium</i>. In FEBS JOURNAL Vol. 281 (pp. 735). Retrieved from https://www.webofscience.com/

Conference Paper

Dietary supplementation with lactose or artificial sweetener enhances swine gut Lactobacillus population abundance

Daly, K., Darby, A. C., Hall, N., Nau, A., Bravo, D., & Shirazi-Beechey, S. P. (2014). Dietary supplementation with lactose or artificial sweetener enhances swine gut Lactobacillus population abundance. British Journal of Nutrition 111 (S1), S30-S35.

Journal article

Dietary supplementation with lactose or artificial sweetener enhances swine gut Lactobacillus population abundance.

Daly, K., Darby, A., Hall, N., Nau, A., Bravo, D., & Shirazi-Beechey, S. (2014). Dietary supplementation with lactose or artificial sweetener enhances swine gut Lactobacillus population abundance.. The British Journal of Nutrition, 111(S1), S30-S35. doi:10.1017/S0007114513002274

DOI
10.1017/S0007114513002274
Journal article

2013

Phylogenomics and Analysis of Shared Genes Suggest a Single Transition to Mutualism in Wolbachia of Nematodes

Comandatore, F., Sassera, D., Montagna, M., Kumar, S., Koutsovoulos, G., Thomas, G., . . . Blaxter, M. (2013). Phylogenomics and Analysis of Shared Genes Suggest a Single Transition to Mutualism in Wolbachia of Nematodes. Genome Biology and Evolution, 5(9), 1668-1674. doi:10.1093/gbe/evt125

DOI
10.1093/gbe/evt125
Journal article

Phylogeny and prevalence of kobuviruses in dogs and cats in the UK

Carmona-Vicente, N., Buesa, J., Brown, P. A., Merga, J. Y., Darby, A. C., Stavisky, J., . . . Radford, A. D. (2013). Phylogeny and prevalence of kobuviruses in dogs and cats in the UK. VETERINARY MICROBIOLOGY, 164(3-4), 246-252. doi:10.1016/j.vetmic.2013.02.014

DOI
10.1016/j.vetmic.2013.02.014
Journal article

Bacterial phylotypes associated with Lutzomyia sand flies sampled from 4 field sites.

Sant'Anna, M. R. V., Darby, A. C., Brazil, R. P., Montoya-Lerma, J., Dillon, V. M., Bates, P. A., . . . Sant'anna, M. R. (2013). Bacterial phylotypes associated with Lutzomyia sand flies sampled from 4 field sites.. Figshare, 7(8).

Journal article

EVALUATING A MODIFIED INFORMED CONSENT FOR OLDER ADULTS IN CORRECTIONAL RESEARCH

Darby, A., Ahalt, C., Cenzer, I. S., Sudore, R. L., & Williams, B. (2013). EVALUATING A MODIFIED INFORMED CONSENT FOR OLDER ADULTS IN CORRECTIONAL RESEARCH. In JOURNAL OF GENERAL INTERNAL MEDICINE Vol. 28 (pp. S74). Retrieved from https://www.webofscience.com/

Conference Paper

Phylogeny and prevalence of Kobuviruses in dogs and cats in the UK

Carmona-Vicente, N., Buesa, J., Brown, P. A., Merga, J. Y., Darby, A. C., Stavisky, J., . . . Radford, A. D. (2013). Phylogeny and prevalence of Kobuviruses in dogs and cats in the UK. Veterinary Microbiology, 164(3-4), 246-252. Retrieved from http://dx.doi.org/10.1016/j.vetmic.2013.02.014

Journal article

2012

Analysis of gene expression from the <i>Wolbachia</i> genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis

Darby, A. C., Armstrong, S. D., Bah, G. S., Kaur, G., Hughes, M. A., Kay, S. M., . . . Makepeace, B. L. (2012). Analysis of gene expression from the <i>Wolbachia</i> genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis. GENOME RESEARCH, 22(12), 2467-2477. doi:10.1101/gr.138420.112

DOI
10.1101/gr.138420.112
Journal article

Diversity of superantigens in Streptococcus equi and zooepidemicus populations

Paillot, R., Wright, N., McLean, R., Darby, A., Anderson, E., Steward, K., . . . Waller, A. (2012). Diversity of superantigens in Streptococcus equi and zooepidemicus populations. Journal of Equine Veterinary Science, 32(10), S24-S25. doi:10.1016/j.jevs.2012.08.058

DOI
10.1016/j.jevs.2012.08.058
Journal article

Pili of Streptococcus equi and Streptococcus zooepidemicus

Steward, K. F., Robinson, C., Maskell, D. J., Holden, M. T. G., Harris, S. R., Darby, A. C., & Waller, A. S. (2012). Pili of Streptococcus equi and Streptococcus zooepidemicus. Journal of Equine Veterinary Science, 32(10), S15. doi:10.1016/j.jevs.2012.08.039

DOI
10.1016/j.jevs.2012.08.039
Journal article

The population diversity of Streptococcus zooepidemicus

Robinson, C., Harris, S. R., Steward, K. F., Webb, K., Efstratiou, A., Darby, A., . . . Waller, A. S. (2012). The population diversity of Streptococcus zooepidemicus. Journal of Equine Veterinary Science, 32(10), S14-S15. doi:10.1016/j.jevs.2012.08.038

DOI
10.1016/j.jevs.2012.08.038
Journal article

Comparative genomics of <i>Brachyspira pilosicoli</i> strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity

Mappley, L. J., Black, M. L., AbuOun, M., Darby, A. C., Woodward, M. J., Parkhill, J., . . . Hampson, D. J. (2012). Comparative genomics of <i>Brachyspira pilosicoli</i> strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity. BMC GENOMICS, 13. doi:10.1186/1471-2164-13-454

DOI
10.1186/1471-2164-13-454
Journal article

Investigation of the Bacterial Communities Associated with Females of <i>Lutzomyia</i> Sand Fly Species from South America

Sant'Anna, M. R. V., Darby, A. C., Brazil, R. P., Montoya-Lerma, J., Dillon, V. M., Bates, P. A., & Dillon, R. J. (2012). Investigation of the Bacterial Communities Associated with Females of <i>Lutzomyia</i> Sand Fly Species from South America. PLOS ONE, 7(8). doi:10.1371/journal.pone.0042531

DOI
10.1371/journal.pone.0042531
Journal article

Comparative genomics of Shiga toxin encoding bacteriophages

Smith, D. L., Rooks, D. J., Fogg, P. C. M., Darby, A. C., Thomson, N. R., McCarthy, A. J., & Allison, H. E. (2012). Comparative genomics of Shiga toxin encoding bacteriophages. BMC GENOMICS, 13. doi:10.1186/1471-2164-13-311

DOI
10.1186/1471-2164-13-311
Journal article

Optimization of <i>Bartonella henselae</i> multilocus sequence typing scheme using single-nucleotide polymorphism analysis of SOLiD sequence data

Zhao, F., Chaloner, G., Darby, A., Song, X. -P., Li, D. -M., Birtles, R., & Liu, Q. -Y. (2012). Optimization of <i>Bartonella henselae</i> multilocus sequence typing scheme using single-nucleotide polymorphism analysis of SOLiD sequence data. CHINESE MEDICAL JOURNAL, 125(13), 2284-2288. doi:10.3760/cma.j.issn.0366-6999.2012.13.008

DOI
10.3760/cma.j.issn.0366-6999.2012.13.008
Journal article

Genome Sequence for "<i>Candidatus</i> Mycoplasma haemominutum," a Low-Pathogenicity Hemoplasma Species

Barker, E. N., Darby, A. C., Helps, C. R., Peters, I. R., Hughes, M. A., Radford, A. D., . . . Tasker, S. (2012). Genome Sequence for "<i>Candidatus</i> Mycoplasma haemominutum," a Low-Pathogenicity Hemoplasma Species. JOURNAL OF BACTERIOLOGY, 194(4), 905-906. doi:10.1128/JB.06560-11

DOI
10.1128/JB.06560-11
Journal article

Optimization of Bartonella henselae multilocus sequence typing scheme using single-nucleotide polymorphism analysis of SOLiD sequence data

Zhao, F., Chaloner, G., Darby, A., Song, X. P., Li, D. M., Birtles, R., & Liu, Q. Y. (2012). Optimization of Bartonella henselae multilocus sequence typing scheme using single-nucleotide polymorphism analysis of SOLiD sequence data. Chinese Medical Journal, 125(13), 2284-2288. Retrieved from http://www.scopus.com/

Journal article

The Genus <i>Arsenophonus</i>

Wilkes, T. E., Duron, O., Darby, A. C., Hypsa, V., Novakova, E., & Hurst, G. D. D. (2012). The Genus <i>Arsenophonus</i>. In MANIPULATIVE TENANTS: BACTERIA ASSOCIATED WITH ARTHROPODS (pp. 225-244). Retrieved from https://www.webofscience.com/

Chapter

2011

Cryptic Diversity within the Major Trypanosomiasis Vector <i>Glossina fuscipes</i> Revealed by Molecular Markers

Dyer, N. A., Ravel, S., Choi, K. -S., Darby, A. C., Causse, S., Kapitano, B., . . . Donnelly, M. J. (2011). Cryptic Diversity within the Major Trypanosomiasis Vector <i>Glossina fuscipes</i> Revealed by Molecular Markers. PLOS NEGLECTED TROPICAL DISEASES, 5(8). doi:10.1371/journal.pntd.0001266

DOI
10.1371/journal.pntd.0001266
Journal article

Molecular characterization of the uncultivatable hemotropic bacterium <i>Mycoplasma haemofelis</i>

Barker, E. N., Darby, A. C., Helps, C. R., Peters, I. R., Heesom, K. J., Arthur, C. J., . . . Tasker, S. (2011). Molecular characterization of the uncultivatable hemotropic bacterium <i>Mycoplasma haemofelis</i>. VETERINARY RESEARCH, 42. doi:10.1186/1297-9716-42-83

DOI
10.1186/1297-9716-42-83
Journal article

The Genus Arsenophonus

The Genus Arsenophonus (2011). In Manipulative Tenants (pp. 263-282). CRC Press. doi:10.1201/b11008-17

DOI
10.1201/b11008-17
Chapter

Complete Genome Sequence of <i>Mycoplasma haemofelis</i>, a Hemotropic Mycoplasma

Barker, E. N., Helps, C. R., Peters, I. R., Darby, A. C., Radford, A. D., & Tasker, S. (2011). Complete Genome Sequence of <i>Mycoplasma haemofelis</i>, a Hemotropic Mycoplasma. JOURNAL OF BACTERIOLOGY, 193(8), 2060-2061. doi:10.1128/JB.00076-11

DOI
10.1128/JB.00076-11
Journal article

Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus

Chapman, D. A. G., Darby, A. C., Da Silva, M., Upton, C., Radford, A. D., & Dixon, L. K. (2011). Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus. EMERGING INFECTIOUS DISEASES, 17(4), 599-605. doi:10.3201/eid1704.101283

DOI
10.3201/eid1704.101283
Journal article

A <i>De Novo</i> Expression Profiling of <i>Anopheles funestus</i>, Malaria Vector in Africa, Using 454 Pyrosequencing

Gregory, R., Darby, A. C., Irving, H., Coulibaly, M. B., Hughes, M., Koekemoer, L. L., . . . Wondji, C. S. (2011). A <i>De Novo</i> Expression Profiling of <i>Anopheles funestus</i>, Malaria Vector in Africa, Using 454 Pyrosequencing. PLOS ONE, 6(2). doi:10.1371/journal.pone.0017418

DOI
10.1371/journal.pone.0017418
Journal article

WHOLE SHOTGUN PYROSEQUENCING OF <i>MYCOPLASMA HAEMOFELIS</i>: THROWING NEW LIGHT ON AN OLD PATHOGEN

Barker, E. N., Helps, C. R., Peters, I. R., Darby, A. C., & Tasker, S. (2011). WHOLE SHOTGUN PYROSEQUENCING OF <i>MYCOPLASMA HAEMOFELIS</i>: THROWING NEW LIGHT ON AN OLD PATHOGEN. JOURNAL OF VETERINARY INTERNAL MEDICINE, 25(3), 709-710. Retrieved from https://www.webofscience.com/

Journal article

2010

Characterization of Pneumonia Due to <i>Streptococcus equi</i> subsp. <i>zooepidemicus</i> in Dogs

Priestnall, S. L., Erles, K., Brooks, H. W., Cardwell, J. M., Waller, A. S., Paillot, R., . . . Schoeniger, S. (2010). Characterization of Pneumonia Due to <i>Streptococcus equi</i> subsp. <i>zooepidemicus</i> in Dogs. CLINICAL AND VACCINE IMMUNOLOGY, 17(11), 1790-1796. doi:10.1128/CVI.00188-10

DOI
10.1128/CVI.00188-10
Journal article

Identification of Three Novel Superantigen-Encoding Genes in <i>Streptococcus equi</i> subsp. <i>zooepidemicus</i> , <i>szeF</i> , <i>szeN</i> , and <i>szeP</i>

Paillot, R., Darby, A. C., Robinson, C., Wright, N. L., Steward, K. F., Anderson, E., . . . Waller, A. S. (2010). Identification of Three Novel Superantigen-Encoding Genes in <i>Streptococcus equi</i> subsp. <i>zooepidemicus</i> , <i>szeF</i> , <i>szeN</i> , and <i>szeP</i>. Infection and Immunity, 78(11), 4817-4827. doi:10.1128/iai.00751-10

DOI
10.1128/iai.00751-10
Journal article

Identification of Three Novel Superantigen-Encoding Genes in <i>Streptococcus equi</i> subsp <i>zooepidemicus</i>, <i>szeF</i>, <i>szeN</i>, and <i>szeP</i>

Paillot, R., Darby, A. C., Robinson, C., Wright, N. L., Steward, K. F., Anderson, E., . . . Waller, A. S. (2010). Identification of Three Novel Superantigen-Encoding Genes in <i>Streptococcus equi</i> subsp <i>zooepidemicus</i>, <i>szeF</i>, <i>szeN</i>, and <i>szeP</i>. INFECTION AND IMMUNITY, 78(11), 4817-4827. doi:10.1128/IAI.00751-10

DOI
10.1128/IAI.00751-10
Journal article

Amplified fragment length polymorphism (AFLP) analysis of closely related wild and captive tsetse fly (<i>Glossina morsitans morsitans</i>) populations

Lall, G. K., Darby, A. C., Nystedt, B., MacLeod, E. T., Bishop, R. P., & Welburn, S. C. (2010). Amplified fragment length polymorphism (AFLP) analysis of closely related wild and captive tsetse fly (<i>Glossina morsitans morsitans</i>) populations. PARASITES & VECTORS, 3. doi:10.1186/1756-3305-3-47

DOI
10.1186/1756-3305-3-47
Journal article

Comparative Genomics and Transduction Potential of <i>Enterococcus faecalis</i> Temperate Bacteriophages

Yasmin, A., Kenny, J. G., Shankar, J., Darby, A. C., Hall, N., Edwards, C., & Horsburgh, M. J. (2010). Comparative Genomics and Transduction Potential of <i>Enterococcus faecalis</i> Temperate Bacteriophages. JOURNAL OF BACTERIOLOGY, 192(4), 1122-1130. doi:10.1128/JB.01293-09

DOI
10.1128/JB.01293-09
Journal article

Characteristics of the genome of <i>Arsenophonus nasoniae</i>, son-killer bacterium of the wasp <i>Nasonia</i>

Darby, A. C., Choi, J. -H., Wilkes, T., Hughes, M. A., Werren, J. H., Hurst, G. D. D., & Colbourne, J. K. (2010). Characteristics of the genome of <i>Arsenophonus nasoniae</i>, son-killer bacterium of the wasp <i>Nasonia</i>. INSECT MOLECULAR BIOLOGY, 19, 75-89. doi:10.1111/j.1365-2583.2009.00950.x

DOI
10.1111/j.1365-2583.2009.00950.x
Journal article

The draft genome sequence of <i>Arsenophonus nasoniae</i>, son-killer bacterium of <i>Nasonia vitripennis</i>, reveals genes associated with virulence and symbiosis

Wilkes, T. E., Darby, A. C., Choi, J. -H., Colbourne, J. K., Werren, J. H., & Hurst, G. D. D. (2010). The draft genome sequence of <i>Arsenophonus nasoniae</i>, son-killer bacterium of <i>Nasonia vitripennis</i>, reveals genes associated with virulence and symbiosis. INSECT MOLECULAR BIOLOGY, 19, 59-73. doi:10.1111/j.1365-2583.2009.00963.x

DOI
10.1111/j.1365-2583.2009.00963.x
Journal article

Functional and Evolutionary Insights from the Genomes of Three Parasitoid <i>Nasonia</i> Species

Werren, J. H., Richards, S., Desjardins, C. A., Niehuis, O., Gadau, J., Colbourne, J. K., . . . Gibbs, R. A. (2010). Functional and Evolutionary Insights from the Genomes of Three Parasitoid <i>Nasonia</i> Species. SCIENCE, 327(5963), 343-348. doi:10.1126/science.1178028

DOI
10.1126/science.1178028
Journal article

2009

Symbiosis Research as a Novel Strategy for Insect Pest Control

Darby, A. C. (2009). Symbiosis Research as a Novel Strategy for Insect Pest Control. In Biorational Control of Arthropod Pests (pp. 207-231). Springer Netherlands. doi:10.1007/978-90-481-2316-2_9

DOI
10.1007/978-90-481-2316-2_9
Chapter

The inherited microbiota of arthropods, and their importance in understanding resistance and immunity

Hurst, G. D. D., & Darby, A. C. (2009). The inherited microbiota of arthropods, and their importance in understanding resistance and immunity. In Insect Infection and Immunity (pp. 119-136). Oxford University PressOxford. doi:10.1093/acprof:oso/9780199551354.003.0008

DOI
10.1093/acprof:oso/9780199551354.003.0008
Chapter

The mosaic genome structure of the <i>Wolbachia w</i>Ri strain infecting <i>Drosophila simulans</i>

Klasson, L., Westberg, J., Sapountzis, P., Naesiund, K., Lutnaes, Y., Darby, A. C., . . . Andersson, S. G. E. (2009). The mosaic genome structure of the <i>Wolbachia w</i>Ri strain infecting <i>Drosophila simulans</i>. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106(14), 5725-5730. doi:10.1073/pnas.0810753106

DOI
10.1073/pnas.0810753106
Journal article

Symbiosis Research as a Novel Strategy for Insect Pest Control

Darby, A. C. (2009). Symbiosis Research as a Novel Strategy for Insect Pest Control. In BIORATIONAL CONTROL OF ARTHROPOD PESTS: APPLICATION AND RESISTANCE MANAGEMENT (pp. 207-231). doi:10.1007/978-90-481-2316-2_9

DOI
10.1007/978-90-481-2316-2_9
Chapter

2008

Fast forward genetics

Darby, A. C., & Hall, N. (2008). Fast forward genetics. NATURE BIOTECHNOLOGY, 26(11), 1248-1249. doi:10.1038/nbt1108-1248

DOI
10.1038/nbt1108-1248
Journal article

Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts

Tamas, I., Wernegreen, J. J., Nystedt, B., Kauppinen, S. N., Darby, A. C., Gomez-Valero, L., . . . Andersson, S. G. E. (2008). Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(39), 14934-14939. doi:10.1073/pnas.0806554105

DOI
10.1073/pnas.0806554105
Journal article

Sequencing veterinary pathogens

Radford, A. D., Williams, N. J., Leatherbarrow, A. J. H., Hall, N., Darby, A. C., & Winstanley, C. (2008). Sequencing veterinary pathogens. VETERINARY RECORD, 163(7), 225-226. doi:10.1136/vr.163.7.225-b

DOI
10.1136/vr.163.7.225-b
Journal article

Concurrent chemoradiotherapy (ConCRT) in locally advanced (LA) non-small cell Lung Cancer (NSCLC); 3-year experience at the Bank of Cyprus (BoC) oncology centre

Decatris, M. P., Charalambous, H., Darby, A., Christodoutides, G., Charalambous, C., & Katodrytis, N. (2008). Concurrent chemoradiotherapy (ConCRT) in locally advanced (LA) non-small cell Lung Cancer (NSCLC); 3-year experience at the Bank of Cyprus (BoC) oncology centre. In LUNG CANCER Vol. 60 (pp. S26). doi:10.1016/S0169-5002(08)70083-7

DOI
10.1016/S0169-5002(08)70083-7
Conference Paper

Visualization of pseudogenes in intracellular bacteria reveals the different tracks to gene destruction

Fuxelius, H. -H., Darby, A. C., Cho, N. -H., & Andersson, S. G. E. (2008). Visualization of pseudogenes in intracellular bacteria reveals the different tracks to gene destruction. GENOME BIOLOGY, 9(2). doi:10.1186/gb-2008-9-2-r42

DOI
10.1186/gb-2008-9-2-r42
Journal article

Genome Analysis

Darby, A. C. (2008). Genome Analysis. International Journal Of Infectious Diseases, 12, E20.

Journal article

2007

The genomic and metabolic diversity of <i>Rickettsia</i>

Fuxelius, H. -H., Darby, A., Min, C. -K., Cho, N. -H., & Andersson, S. G. E. (2007). The genomic and metabolic diversity of <i>Rickettsia</i>. RESEARCH IN MICROBIOLOGY, 158(10), 745-753. doi:10.1016/j.resmic.2007.09.008

DOI
10.1016/j.resmic.2007.09.008
Journal article

Intracellular pathogens go extreme: genome evolution in the Rickettsiales

Darby, A. C., Cho, N. -H., Fuxelius, H. -H., Westberg, J., & Andersson, S. G. E. (2007). Intracellular pathogens go extreme: genome evolution in the Rickettsiales. TRENDS IN GENETICS, 23(10), 511-520. doi:10.1016/j.tig.2007.08.002

DOI
10.1016/j.tig.2007.08.002
Journal article

Antioxidants promote establishment of trypanosome infections in tsetse

MacLeod, E. T., Maudlin, I., Darby, A. C., & Welburn, S. C. (2007). Antioxidants promote establishment of trypanosome infections in tsetse. PARASITOLOGY, 134, 827-831. doi:10.1017/S0031182007002247

DOI
10.1017/S0031182007002247
Journal article

The <i>Orientia tsutsugamushi</i> genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes

Cho, N. -H., Kim, H. -R., Lee, J. -H., Kim, S. -Y., Kim, J., Cha, S., . . . Kim, I. -S. (2007). The <i>Orientia tsutsugamushi</i> genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 104(19), 7981-7986. doi:10.1073/pnas.0611553104

DOI
10.1073/pnas.0611553104
Journal article

Factors Affecting Trypanosome Maturation in Tsetse Flies

Macleod, E. T., Darby, A. C., Maudlin, I., & Welburn, S. C. (2007). Factors Affecting Trypanosome Maturation in Tsetse Flies. PLOS ONE, 2(2). doi:10.1371/journal.pone.0000239

DOI
10.1371/journal.pone.0000239
Journal article

The incidence of thromboembolism in patients receiving adjuvant anthracycline based chemotherapy for early stage breast cancer

Nolan, L., Boleti, E., Darby, A., & Simmonds, P. D. (2007). The incidence of thromboembolism in patients receiving adjuvant anthracycline based chemotherapy for early stage breast cancer. In BREAST CANCER RESEARCH AND TREATMENT Vol. 106 (pp. S150). Retrieved from https://www.webofscience.com/

Conference Paper

2006

Insect Symbiosis, Volume 2

Bourtzis, K., & Miller, T. A. (Eds.) (n.d.). Insect Symbiosis, Volume 2. In . CRC Press. doi:10.1201/9781420005936

DOI
10.1201/9781420005936
Chapter

2005

Aphid-symbiotic bacteria cultured in insect cell lines

Darby, A. C., Chandler, S. M., Welburn, S. C., & Douglas, A. E. (2005). Aphid-symbiotic bacteria cultured in insect cell lines. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(8), 4833-4839. doi:10.1128/AEM.71.8.4833-4839.2005

DOI
10.1128/AEM.71.8.4833-4839.2005
Journal article

Extrachromosomal DNA of the symbiont <i>Sodalis glossinidius</i>

Darby, A. C., Lagnel, J., Matthew, C. Z., Bourtzis, K., Maudlin, I., & Welburn, S. C. (2005). Extrachromosomal DNA of the symbiont <i>Sodalis glossinidius</i>. JOURNAL OF BACTERIOLOGY, 187(14), 5003-5007. doi:10.1128/JB.187.14.5003-5007.2005

DOI
10.1128/JB.187.14.5003-5007.2005
Journal article

The rapid isolation and growth dynamics of the tsetse symbiont <i>Sodalis glossinidius</i>

Matthew, C. Z., Darby, A. C., Young, S. A., Hume, L. H., & Welburn, S. C. (2005). The rapid isolation and growth dynamics of the tsetse symbiont <i>Sodalis glossinidius</i>. FEMS MICROBIOLOGY LETTERS, 248(1), 69-74. doi:10.1016/j.femsle.2005.05.024

DOI
10.1016/j.femsle.2005.05.024
Journal article

2004

Linking the bacterial community in pea aphids with host-plant use and natural enemy resistance

Ferrari, J., Darby, A. C., Daniell, T. J., Godfray, H. C. J., & Douglas, A. E. (2004). Linking the bacterial community in pea aphids with host-plant use and natural enemy resistance. ECOLOGICAL ENTOMOLOGY, 29(1), 60-65. doi:10.1111/j.1365-2311.2004.00574.x

DOI
10.1111/j.1365-2311.2004.00574.x
Journal article

2003

Diversity of bacteria associated with natural aphid populations

Haynes, S., Darby, A. C., Daniell, T. J., Webster, G., van Veen, F. J. F., Godfray, H. C. J., . . . Douglas, A. E. (2003). Diversity of bacteria associated with natural aphid populations. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 69(12), 7216-7223. doi:10.1128/AEM.69.12.7216-7223.2003

DOI
10.1128/AEM.69.12.7216-7223.2003
Journal article

Elucidation of the transmission patterns of an insect-borne bacterium

Darby, A. C., & Douglas, A. E. (2003). Elucidation of the transmission patterns of an insect-borne bacterium. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 69(8), 4403-4407. doi:10.1128/AEM.69.8.4403-4407.2003

DOI
10.1128/AEM.69.8.4403-4407.2003
Journal article

The significance of a facultative bacterium to natural populations of the pea aphid <i>Acyrthosiphon pisum</i>

Darby, A. C., Tosh, C. R., Walters, K. F. A., & Douglas, A. E. (2003). The significance of a facultative bacterium to natural populations of the pea aphid <i>Acyrthosiphon pisum</i>. ECOLOGICAL ENTOMOLOGY, 28(2), 145-150. doi:10.1046/j.1365-2311.2003.00492.x

DOI
10.1046/j.1365-2311.2003.00492.x
Journal article

The ecological significance of symbiotic microorganisms in animals: perspectives from the microbiota of aphids

Douglas, A. E., Darby, A. C., Birkle., L. M., & Walters., K. F. A. (2003). The ecological significance of symbiotic microorganisms in animals: perspectives from the microbiota of aphids. In R. M. Hails, J. Berringer, & H. C. J. Godfray (Eds.), Genes in the Environment (pp. 306-325). Oxford: Blackwell Scientific Publishers,.

Chapter

2001

An aphid-borne bacterium allied to the secondary symbionts of whitefly

Darby, A. (2001). An aphid-borne bacterium allied to the secondary symbionts of whitefly. FEMS Microbiology Ecology, 36(1), 43-50. doi:10.1016/s0168-6496(01)00117-9

DOI
10.1016/s0168-6496(01)00117-9
Journal article

An aphid-borne bacterium allied to the secondary symbionts of whitefly

Darby, A. C., Birkle, L. M., Turner, S. L., & Douglas, A. E. (2001). An aphid-borne bacterium allied to the secondary symbionts of whitefly. FEMS MICROBIOLOGY ECOLOGY, 36(1), 43-50. doi:10.1111/j.1574-6941.2001.tb00824.x

DOI
10.1111/j.1574-6941.2001.tb00824.x
Journal article

2000

Intraguild predators and the spatial distribution of a parasitoid

Raymond, B., Darby, A. C., & Douglas, A. E. (2000). Intraguild predators and the spatial distribution of a parasitoid. OECOLOGIA, 124(3), 367-372. doi:10.1007/s004420000396

DOI
10.1007/s004420000396
Journal article

The olfactory responses of coccinellids to aphids on plants

Raymond, B., Darby, A. C., & Douglas, A. E. (2000). The olfactory responses of coccinellids to aphids on plants. ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA, 95(1), 113-117. doi:10.1046/j.1570-7458.2000.00648.x

DOI
10.1046/j.1570-7458.2000.00648.x
Journal article

The olfactory responses of coccinellids to aphids on plants.

Raymond, B., Darby, A. C., & Douglas, A. E. (2000). The olfactory responses of coccinellids to aphids on plants.. Entomologia Experimentalis et Applicata., 95(1), 113-117. doi:10.1046/j.1570-7458.2000.00648.x

DOI
10.1046/j.1570-7458.2000.00648.x
Journal article