2022
A genomic survey of LINE elements in Pipidae aquatic frogs shed light on Rex-elements evolution in these genomes (Journal article)
Gama, J. M., Ludwig, A., Gazolla, C. B., Guizelini, D., Recco-Pimentel, S. M., & Bruschi, D. P. (2022). A genomic survey of LINE elements in Pipidae aquatic frogs shed light on Rex-elements evolution in these genomes. MOLECULAR PHYLOGENETICS AND EVOLUTION, 168. doi:10.1016/j.ympev.2022.107393DOI: 10.1016/j.ympev.2022.107393
Proteomics Uncovers Novel Components of an Interactive Protein Network Supporting RNA Export in Trypanosomes (Journal article)
Inoue, A. H., Domingues, P. F., Serpeloni, M., Hiraiwa, P. M., Vidal, N. M., Butterfield, E. R., . . . Avila, A. R. (2022). Proteomics Uncovers Novel Components of an Interactive Protein Network Supporting RNA Export in Trypanosomes. MOLECULAR & CELLULAR PROTEOMICS, 21(3). doi:10.1016/j.mcpro.2022.100208DOI: 10.1016/j.mcpro.2022.100208
Evolutionary dynamics of <i>DIRS-like</i> and <i>Ngaro-like</i> retrotransposons in <i>Xenopus laevis</i> and <i>Xenopus tropicalis</i> genomes (Journal article)
Gazolla, C. B., Ludwig, A., Gama, J. D. M., & Bruschi, D. P. (2022). Evolutionary dynamics of <i>DIRS-like</i> and <i>Ngaro-like</i> retrotransposons in <i>Xenopus laevis</i> and <i>Xenopus tropicalis</i> genomes. G3-GENES GENOMES GENETICS, 12(2). doi:10.1093/g3journal/jkab391DOI: 10.1093/g3journal/jkab391
2021
Transposable elements expression in <i>Rhinella marina</i> (cane toad) specimens submitted to immune and stress challenge (Journal article)
Ludwig, A., Schemberger, M. O., Gazolla, C. B., de Moura Gama, J., Duarte, I., Lopes, A. L. K., . . . Bruschi, D. P. (2021). Transposable elements expression in <i>Rhinella marina</i> (cane toad) specimens submitted to immune and stress challenge. GENETICA, 149(5-6), 335-342. doi:10.1007/s10709-021-00130-wDOI: 10.1007/s10709-021-00130-w
Evolutionary dynamics of <i>DIRS-like</i> and <i>Ngaro-like</i> retrotransposons in <i>Xenopus laevis</i> and <i>Xenopus tropicalis</i> genomes (Preprint)
DOI: 10.1101/2021.08.05.455354
Distribution of <i>Merlin</i> in eukaryotes and first report of DNA transposons in kinetoplastid protists (Journal article)
Lopes, A. L. K., Kriegova, E., Lukes, J., Krieger, M. A., & Ludwig, A. (2021). Distribution of <i>Merlin</i> in eukaryotes and first report of DNA transposons in kinetoplastid protists. PLOS ONE, 16(5). doi:10.1371/journal.pone.0251133DOI: 10.1371/journal.pone.0251133
Molecular detection of Apicomplexa protozoa in tissues from Alouatta guariba clamitans (Journal article)
Ludwig, A., Murer, L., Santos, H. F. D., Ludwig, A., Sangioni, L. A., & Vogel, F. S. F. (n.d.). Molecular detection of Apicomplexa protozoa in tissues from Alouatta guariba clamitans. Pesquisa Veterinária Brasileira, 41. doi:10.1590/1678-5150-pvb-6717DOI: 10.1590/1678-5150-pvb-6717
2020
Characterising ISWI chromatin remodeler in <i>Trypanosoma cruzi</i> (Journal article)
Diaz-Olmos, Y., Batista, M., Ludwig, A., & Marchini, F. K. (2020). Characterising ISWI chromatin remodeler in <i>Trypanosoma cruzi</i>. MEMORIAS DO INSTITUTO OSWALDO CRUZ, 115. doi:10.1590/0074-02760190457DOI: 10.1590/0074-02760190457
2019
Study of VIPER and TATE in kinetoplastids and the evolution of tyrosine recombinase retrotransposons (Journal article)
Ribeiro, Y. C., Robe, L. J., Veluza, D. S., Bezerra dos Santos, C. M., Kalb Lopes, A. L., Krieger, M. A., & Ludwig, A. (2019). Study of VIPER and TATE in kinetoplastids and the evolution of tyrosine recombinase retrotransposons. MOBILE DNA, 10(1). doi:10.1186/s13100-019-0175-2DOI: 10.1186/s13100-019-0175-2
2018
<i>Trypanosoma cruzi </i>transcriptome during axenic epimastigote growth curve (Journal article)
Bezerra dos Santos, C. M., Ludwig, A., Kessler, R. L., Pontello Rampazzo, R. D. C., Inoue, A. H., Krieger, M. A., . . . Probst, C. M. (2018). <i>Trypanosoma cruzi </i>transcriptome during axenic epimastigote growth curve. MEMORIAS DO INSTITUTO OSWALDO CRUZ, 113(5). doi:10.1590/0074-02760170404DOI: 10.1590/0074-02760170404
Evolutionary analyses of myosin genes in trypanosomatids show a history of expansion, secondary losses and neofunctionalization (Journal article)
Silva de Souza, D. A., Pavoni, D. P., Krieger, M. A., & Ludwig, A. (2018). Evolutionary analyses of myosin genes in trypanosomatids show a history of expansion, secondary losses and neofunctionalization. SCIENTIFIC REPORTS, 8. doi:10.1038/s41598-017-18865-yDOI: 10.1038/s41598-017-18865-y
2017
<i>In silico</i> analysis of amino acid variation in human respiratory syncytial virus: insights into immunodiagnostics (Journal article)
Souza, C., Zanchin, N. I. T., Krieger, M. A., & Ludwig, A. (2017). <i>In silico</i> analysis of amino acid variation in human respiratory syncytial virus: insights into immunodiagnostics. MEMORIAS DO INSTITUTO OSWALDO CRUZ, 112(10), 655-663. doi:10.1590/0074-02760170013DOI: 10.1590/0074-02760170013
2016
Genomic and phylogenetic evidence of VIPER retrotransposon domestication in trypanosomatids (Journal article)
Ludwig, A., & Krieger, M. A. (2016). Genomic and phylogenetic evidence of VIPER retrotransposon domestication in trypanosomatids. MEMORIAS DO INSTITUTO OSWALDO CRUZ, 111(12), 765-769. doi:10.1590/0074-02760160224DOI: 10.1590/0074-02760160224
2014
<i>BuT2</i> Is a Member of the Third Major Group of <i>hAT</i> Transposons and Is Involved in Horizontal Transfer Events in the Genus <i>Drosophila</i> (Journal article)
Rossato, D. O., Ludwig, A., Depra, M., Loreto, E. L. S., Ruiz, A., & Valente, V. L. S. (2014). <i>BuT2</i> Is a Member of the Third Major Group of <i>hAT</i> Transposons and Is Involved in Horizontal Transfer Events in the Genus <i>Drosophila</i>. GENOME BIOLOGY AND EVOLUTION, 6(2), 352-365. doi:10.1093/gbe/evu017DOI: 10.1093/gbe/evu017
2013
The <i>Drosophila flavopilosa</i> species group (Diptera, Drosophilidae): An array of exciting questions (Journal article)
Robe, L. J., De Re, F. C., Ludwig, A., & Loreto, E. L. S. (2013). The <i>Drosophila flavopilosa</i> species group (Diptera, Drosophilidae): An array of exciting questions. FLY, 7(2), 59-69. doi:10.4161/fly.23923DOI: 10.4161/fly.23923
2012
<i>Mar</i>, a MITE family of <i>hAT</i> transposons in <i>Drosophila</i> (Journal article)
Depra, M., Ludwig, A., Valente, V. L. S., & Loreto, E. L. S. (2012). <i>Mar</i>, a MITE family of <i>hAT</i> transposons in <i>Drosophila</i>. MOBILE DNA, 3. doi:10.1186/1759-8753-3-13DOI: 10.1186/1759-8753-3-13
2010
hosimary: a new hAT transposon group involved in horizontal transfer (Journal article)
Depra, M., Panzera, Y., Ludwig, A., Valente, V. L. S., & Loreto, E. L. S. (2010). hosimary: a new hAT transposon group involved in horizontal transfer. MOLECULAR GENETICS AND GENOMICS, 283(5), 451-459. doi:10.1007/s00438-010-0531-xDOI: 10.1007/s00438-010-0531-x
<i>harrow</i>: new <i>Drosophila hAT</i> transposons involved in horizontal transfer (Journal article)
Mota, N. R., Ludwig, A., Valente, V. L. D. S., & Loreto, E. L. S. (2010). <i>harrow</i>: new <i>Drosophila hAT</i> transposons involved in horizontal transfer. INSECT MOLECULAR BIOLOGY, 19(2), 217-228. doi:10.1111/j.1365-2583.2009.00977.xDOI: 10.1111/j.1365-2583.2009.00977.x
2009
Evolution of Tom, 297, 17.6 and rover retrotransposons in Drosophilidae species. (Journal article)
Vidal, N. M., Ludwig, A., & Loreto, E. L. S. (2009). Evolution of Tom, 297, 17.6 and rover retrotransposons in Drosophilidae species.. Molecular genetics and genomics : MGG, 282(4), 351-362. doi:10.1007/s00438-009-0468-0DOI: 10.1007/s00438-009-0468-0
2008
Multiple invasions of <i>Errantivirus</i> in the genus <i>Drosophila</i> (Journal article)
Ludwig, A., Valente, V. L. D. S., & Loreto, E. L. S. (2008). Multiple invasions of <i>Errantivirus</i> in the genus <i>Drosophila</i>. INSECT MOLECULAR BIOLOGY, 17(2), 113-124. doi:10.1111/j.1365-2583.2007.00787.xDOI: 10.1111/j.1365-2583.2007.00787.x
2007
Evolutionary pattern of the <i>gtwin</i> retrotransposon in the <i>Drosophila melanogaster</i> subgroup (Journal article)
Ludwig, A., & Loreto, E. L. S. (2007). Evolutionary pattern of the <i>gtwin</i> retrotransposon in the <i>Drosophila melanogaster</i> subgroup. GENETICA, 130(2), 161-168. doi:10.1007/s10709-006-9003-yDOI: 10.1007/s10709-006-9003-y
